Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1217
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    24   0.55 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       24   0.73 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   0.96 
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   2.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   3.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   9.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   9.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   9.0  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 24.2 bits (50), Expect = 0.55
 Identities = 18/41 (43%), Positives = 19/41 (46%)
 Frame = +1

Query: 190 WVKPQLPGGARYPIRPIVSRITFTGRPFTTT*LGKPWRYPT 312
           W K +  GG R PIR    R    GRP   T LG P R  T
Sbjct: 8   WHKRRATGGKRKPIRK--KRKFELGRPAANTKLG-PQRIHT 45


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 362 FAITPSWRKGDVM 324
           +AIT SW+ GDVM
Sbjct: 98  WAITVSWKAGDVM 110


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 0.96
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 172 RKPAVTSRKLTCSDARLNDWHGSTVTVRPATRQTLIRTSLTATK 41
           R P+V S   TC   + N   GS  T+  A + +  +   ++ K
Sbjct: 569 RTPSVMSASSTCKKDKKNAGSGSRFTIYKANKASKKKREKSSAK 612


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 63  RIKVCLVAGLTVTVDPCQSFNLASEQVN 146
           +I +  +  LT+T+  CQ+F  +    N
Sbjct: 5   QILILFILSLTITIVMCQTFTYSHGWTN 32


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +2

Query: 245 VVLHSLADLLQRRDWE 292
           V++H   D++++ DW+
Sbjct: 239 VIIHPKYDIIEKDDWQ 254


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 194 TQLIIKPQKTGGDFKEIDLLGRQIERLARVNRYSQ 90
           T+ ++ P   GG+ + +  L R +ER A V  + +
Sbjct: 220 TEGLLPPVWVGGESEALARLERHLERKAWVASFGR 254


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 273 KRSASECNTTHYRANWVPGP 214
           K+  S+C+T  YR   V  P
Sbjct: 565 KKQPSDCDTLEYRNGEVTTP 584


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 231 NWVPGPPWKLRL 196
           NWVPG   +LRL
Sbjct: 341 NWVPGNHDQLRL 352


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 202 QLPGGARYPIRPIVSRITFTGRP 270
           QLP  A  P+ PI +    +G P
Sbjct: 408 QLPPSAGAPMPPIPNMSNMSGMP 430


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 231 NWVPGPPWKLRL 196
           NWVPG   +LRL
Sbjct: 341 NWVPGNHDQLRL 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,162
Number of Sequences: 438
Number of extensions: 2689
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)