Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1217
(396 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13880.1 68417.m02150 leucine-rich repeat family protein cont... 28 2.0
At3g46850.1 68416.m05085 subtilase family protein contains simil... 28 2.0
At3g12140.2 68416.m01511 emsy N terminus domain-containing prote... 27 6.0
At3g12140.1 68416.m01510 emsy N terminus domain-containing prote... 27 6.0
At2g20240.1 68415.m02365 expressed protein 27 6.0
At5g66570.1 68418.m08392 oxygen-evolving enhancer protein 1-1, c... 26 7.9
At5g46900.1 68418.m05781 protease inhibitor/seed storage/lipid t... 26 7.9
At2g24860.1 68415.m02973 chaperone protein dnaJ-related similar ... 26 7.9
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 26 7.9
>At4g13880.1 68417.m02150 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-0B
[Lycopersicon esculentum] gi|3894387|gb|AAC78593
Length = 725
Score = 28.3 bits (60), Expect = 2.0
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 114 QSFNLASEQVN-FLEVTAGFLRFDDELGQAATSRGGPVPNSPYSESYYIHWPTFYNDVTG 290
QS L+S ++ L + G L++ L G +P+S S SY H YND T
Sbjct: 115 QSLELSSNNISGILPDSIGNLKYLRSLSFRTCHLFGKIPSSLGSLSYLTHLDLSYNDFTS 174
Query: 291 K 293
+
Sbjct: 175 E 175
>At3g46850.1 68416.m05085 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo];
Length = 736
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 354 YAKLAKGGCDARRLSWVTPGFSQSRRCKRSASECNT 247
Y K A CDA + +PG S+R K C+T
Sbjct: 367 YGKSASSRCDASSAGFCSPGCLDSKRVKGKIVLCDT 402
>At3g12140.2 68416.m01511 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 327
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 266 DLLQR-RDWENPGVTQLNRLASHPPF 340
D +QR RDW G +Q+ R A+ PF
Sbjct: 60 DTIQRIRDWRQGGASQITRHATIQPF 85
>At3g12140.1 68416.m01510 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 327
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 266 DLLQR-RDWENPGVTQLNRLASHPPF 340
D +QR RDW G +Q+ R A+ PF
Sbjct: 60 DTIQRIRDWRQGGASQITRHATIQPF 85
>At2g20240.1 68415.m02365 expressed protein
Length = 713
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = -3
Query: 169 KPAVTSRKLTCSDARLNDWHGSTVTVRPATRQTLIRTSLTATKAGVANRKRIF 11
K +T+ + SD+ + WH + P+ R L + +NRK +F
Sbjct: 582 KTLLTASGFSGSDSLMTRWHSLESPLDPSLRDKFANKELIKRRKQRSNRKLVF 634
>At5g66570.1 68418.m08392 oxygen-evolving enhancer protein 1-1,
chloroplast / 33 kDa subunit of oxygen evolving system
of photosystem II (PSBO1) (PSBO) identical to SP:P23321
Oxygen-evolving enhancer protein 1-1, chloroplast
precursor (OEE1) (33 kDa subunit of oxygen evolving
system of photosystem II) (OEC 33 kDa subunit) (33 kDa
thylakoid membrane protein) [Arabidopsis thaliana]
Length = 332
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 175 GLMMSWVKPQLPGGARYPIRPIVSRITFTGRPFTTT 282
G+ + V QLPGG R P V ++ +G+P + T
Sbjct: 193 GIDYAAVTVQLPGGERVPFLFTVKQLDASGKPDSFT 228
>At5g46900.1 68418.m05781 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 127
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 193 PSSSSNRRKPAVTSRKLTCSDA 128
P S+ +KPA S K TC DA
Sbjct: 30 PPPKSHHKKPATPSPKPTCKDA 51
>At2g24860.1 68415.m02973 chaperone protein dnaJ-related similar to
Tsi1-interacting protein TSIP1 (GI:4337001) [Nicotiana
tabacum]
Length = 144
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 267 SASECNTTHYRANWVPGPP 211
S S+C T +RA W+ PP
Sbjct: 123 SCSDCKGTGFRAKWLEKPP 141
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 284 HVVVKGRPVNVIRLTIGRIG 225
H+V+KGRP V+ ++ + G
Sbjct: 31 HIVIKGRPCKVVEVSTSKTG 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,920,851
Number of Sequences: 28952
Number of extensions: 186720
Number of successful extensions: 524
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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