Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1216
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   3.5  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    26   4.7  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   4.7  

>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 251 SSNGFIKHPRQTGSPLPCTVKKYFYVFI--LSFCFSGSISRILCL 123
           +S  FI +P Q+ + + C     FY FI  +  C  GSIS  L L
Sbjct: 421 ASATFISYPFQSLAFIVCLKYCSFYFFIGPICICLLGSISSYLLL 465


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 100 LMEIQDKSKQRIRDIEPEKQK 162
           LME + K K+RIR IE +K K
Sbjct: 141 LMEKEKKEKERIRLIEEQKHK 161


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 255 DNFIKTVAKKRRSSIGGSQTDDIISIQPLPIFIEKK 362
           D  +K++  K  + I   ++DD   +QPL +   K+
Sbjct: 577 DTSVKSITNKATNEITTLKSDDSAKMQPLDVLASKR 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,617
Number of Sequences: 5004
Number of extensions: 40999
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)