Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1216
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723...    28   6.3  
02_05_1346 - 35831261-35831371,35831609-35831779,35831850-358318...    27   8.4  

>01_05_0660 - 24071523-24071780,24071873-24072127,24072209-24072380,
            24072458-24072685,24072785-24072918,24073005-24073088,
            24073231-24073521,24073599-24073931,24074016-24074266,
            24074354-24074620,24074707-24074867,24074978-24075294,
            24075386-24075667,24075753-24076054,24076147-24076237,
            24076326-24076379,24076497-24076573,24076700-24076859,
            24077129-24077213,24077421-24077630,24077736-24078097
          Length = 1457

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 269  LYKIVLSSNGFIKHPRQTGSPLPCTVKKYF 180
            LY +V+S  G I+ P + G+P+   V+ YF
Sbjct: 1391 LYGLVVSQFGDIETPMEDGTPVKVFVENYF 1420


>02_05_1346 -
           35831261-35831371,35831609-35831779,35831850-35831888,
           35831987-35832049,35832616-35832679,35832709-35832778,
           35832866-35832934,35833101-35833186,35833670-35833800,
           35834021-35834083,35834166-35834211,35834542-35834618,
           35834690-35834724,35835480-35835542,35835632-35835719,
           35836027-35836077,35836201-35836269
          Length = 431

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 422 DLCKIHGKYLVLKGAAELNHFFLDE 348
           D+CK HGKY   K  +E   + LDE
Sbjct: 221 DICKKHGKYFSAKTLSEHYKWALDE 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,406
Number of Sequences: 37544
Number of extensions: 225375
Number of successful extensions: 373
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)