Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1216
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18108| Best HMM Match : HA (HMM E-Value=0.059)                      29   3.7  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.6  
SB_24486| Best HMM Match : SNF2_N (HMM E-Value=0)                      27   8.6  

>SB_18108| Best HMM Match : HA (HMM E-Value=0.059)
          Length = 282

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/59 (30%), Positives = 34/59 (57%)
 Frame = +1

Query: 61  MGSYAKRSAYLASLMEIQDKSKQRIRDIEPEKQKLRMKT*KYFFTVHGKGEPVCRGCLM 237
           +G+YAK+    A L E+ ++    + +++ ++QK+R    KYFF    K E + + CL+
Sbjct: 60  IGTYAKKKR--AVLEELCEEKVHALSEVKIQQQKIRRLKEKYFFRSVLK-EALGKTCLL 115


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/27 (51%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
 Frame = +1

Query: 100 LMEIQDKSKQ--RIRDIEPEKQKLRMK 174
           L+E +D+S+Q  RIRD+E E ++LR K
Sbjct: 216 LLEPEDESQQAERIRDLEHEVRRLRSK 242


>SB_24486| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 785

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 36  CHIYRILANGVICKKI 83
           CHIYR++A G + KKI
Sbjct: 700 CHIYRLIATGTMEKKI 715


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,676,031
Number of Sequences: 59808
Number of extensions: 274238
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)