Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1216
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58140.1 68416.m06483 phenylalanyl-tRNA synthetase class IIc ...    30   1.3  
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   4.0  
At1g71300.1 68414.m08228 Vps52/Sac2 family protein similar to SP...    27   7.0  
At1g71270.1 68414.m08225 Vps52/Sac2 family protein similar to SP...    27   7.0  
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR...    27   9.3  
At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR...    27   9.3  
At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR...    27   9.3  

>At3g58140.1 68416.m06483 phenylalanyl-tRNA synthetase class IIc
           family protein similar to phenylalanine-tRNA synthetase
           [Homo sapiens] GI:3983103; contains Pfam profile
           PF01409: tRNA synthetases class II core domain (F)
          Length = 429

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 271 QLLRKGDHPLGVLKLMI*YLYSHYPYSSRKK*FNSAAPFNT--RYFP*ILHKSSHV 432
           QL R+  HP+G+LK  I Y Y    YS++ + F   +P  T  + F  +L  + HV
Sbjct: 88  QLHRRDKHPIGILKNAI-YDYFDSNYSNKFEKFEDLSPIVTTKQNFDDVLVPADHV 142


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 301 PMDDLLFLATVFIKLSFHLTVSLNILG 221
           P DDL  LA  F  L+ HL ++L +LG
Sbjct: 363 PSDDLKHLAIEFTTLAGHLPLALRVLG 389


>At1g71300.1 68414.m08228 Vps52/Sac2 family protein similar to
           SP|P39904 SAC2 protein {Saccharomyces cerevisiae};
           contains Pfam profile PF04129: Vps52 / Sac2 family
          Length = 701

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 118 KSKQRIRDIEPEKQKLRMK 174
           KS + ++D+EPE +KLR K
Sbjct: 201 KSSKALKDVEPELEKLRQK 219


>At1g71270.1 68414.m08225 Vps52/Sac2 family protein similar to
           SP|P39904 SAC2 protein {Saccharomyces cerevisiae};
           contains Pfam profile PF04129: Vps52 / Sac2 family
          Length = 707

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 118 KSKQRIRDIEPEKQKLRMK 174
           KS + ++D+EPE +KLR K
Sbjct: 207 KSSKALKDVEPELEKLRQK 225


>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1046

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -3

Query: 452 QYFVKFPTWEDLCKIHGKYLVLKGAAELNHFFLDEYG*WLYRYYIISLR 306
           +Y V FPT E+ CKI   Y   +  A      L E   WL     + LR
Sbjct: 342 KYHVDFPTREEACKIFCTYAFRRSFAPYGFEKLAERVTWLCSNLPLGLR 390


>At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.; closest
           homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
          Length = 1404

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 307 EPPMDDLLFLATVFIKLSFHLTVSLNILG 221
           + P DD   LA    KL+ HL + LN+LG
Sbjct: 361 DSPPDDFKELAFEVAKLAGHLPLGLNVLG 389


>At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.; closest
           homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
          Length = 1449

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 307 EPPMDDLLFLATVFIKLSFHLTVSLNILG 221
           + P DD   LA    KL+ HL + LN+LG
Sbjct: 361 DSPPDDFKELAFEVAKLAGHLPLGLNVLG 389


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,527,024
Number of Sequences: 28952
Number of extensions: 200021
Number of successful extensions: 422
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)