Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1215
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 132 2e-32
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 73 2e-14
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 70 1e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 67 1e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 46 3e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 41 7e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 34 0.008
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 28 0.72
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 27 1.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.3
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 2.9
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.9
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 3.9
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 5.1
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 25 5.1
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 6.7
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 25 6.7
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 8.6
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 24 8.9
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 24 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 132 bits (319), Expect = 2e-32
Identities = 58/61 (95%), Positives = 58/61 (95%)
Frame = +2
Query: 257 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKVN 436
DEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK N
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSN 115
Query: 437 R 439
R
Sbjct: 116 R 116
Score = 108 bits (259), Expect = 4e-25
Identities = 47/53 (88%), Positives = 51/53 (96%)
Frame = +3
Query: 96 DEEVAALVVDNGSGMCKAGFAGDDAPRAEFPSIVGRPRHQGVMVGMGQKDSYV 254
+EE+AALV+DNGSGMCKAGFAGDDAPRA FPSIVGRPRH G+MVGMGQKDSYV
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYV 54
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 72.9 bits (171), Expect = 2e-14
Identities = 27/74 (36%), Positives = 51/74 (68%)
Frame = +2
Query: 218 RDGRYGTEGLLCRDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 397
+ G + ++ DEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 398 VLLTEAPLNPKVNR 439
+LLTE P+NP NR
Sbjct: 103 ILLTEPPMNPVANR 116
Score = 49.6 bits (113), Expect = 2e-07
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +3
Query: 102 EVAALVVDNGSGMCKAGFAGDDAPRAEFPSIVGRP 206
E A +V+DNG+G K G+A D+ PR +FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 70.1 bits (164), Expect = 1e-13
Identities = 30/55 (54%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Frame = +2
Query: 260 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 421
EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 61 EAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
Score = 59.7 bits (138), Expect = 2e-10
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAEFPSIVGRPRHQGVMVGMGQKDSYV 254
+ +DNGSG KAGFAGDD P+ FP+ VGR +H+ VM QKD +V
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFV 58
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 66.9 bits (156), Expect = 1e-12
Identities = 27/51 (52%), Positives = 33/51 (64%)
Frame = +2
Query: 287 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKVNR 439
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NR
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENR 139
Score = 39.9 bits (89), Expect = 2e-04
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAEFPSIVGRPRHQGVMVG--MGQKDSYV 254
+++DNG+G K G+AG+DAP FP+++ R G G + K SY+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYM 55
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 46.0 bits (104), Expect = 3e-06
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +2
Query: 284 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKVNR 439
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENR 114
Score = 37.9 bits (84), Expect = 7e-04
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAEFPSIVG 200
+EV+A+V+D GS + GF+G+D P+ PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 41.1 bits (92), Expect = 7e-05
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2
Query: 299 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 427
P E +++NWD ME++ +TF +L + EHP+ +TE NP
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANP 127
Score = 33.5 bits (73), Expect = 0.015
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAEFPSIVGRPR 209
LV+DNGS +AG+ G+ P+ F ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 34.3 bits (75), Expect = 0.008
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAEFPSIVG 200
EE+ +LV+D GS + G+AG+++P PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
Score = 33.1 bits (72), Expect = 0.019
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 308 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 430
+GI+ +W+ W +L+V P E+ +++TE NP+
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQ 114
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 27.9 bits (59), Expect = 0.72
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -1
Query: 331 IPVSNDSVFDGVFEGQDTSFALCLIST*ESFCPIPTITP*WRGLPTIEGNSARGASSPAK 152
+P +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 151 PALHIP 134
P L+ P
Sbjct: 123 PQLNSP 128
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 1.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 436 VDLGVEGSLSEQDWVF 389
VD+ V GSL EQ+W F
Sbjct: 96 VDMAVNGSLFEQEWAF 111
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 1.3
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -1
Query: 253 T*ESFCPI-PTITP*WRGLPTIEGNSARGASSPAKPALHIPEPLSTTNAATSSS 95
T S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 2.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 255 LHKSPSVPYRPSRPDGGAFPRSRGTR 178
+ K+PS PY SRP A S TR
Sbjct: 310 ISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 299 PIEHGIVTNWDDMEKIWHHTF 361
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 25.4 bits (53), Expect = 3.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAEFPSIVGRPR 209
+V+DNG+ KAGFAG E P+ + R +
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSK 37
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.0 bits (52), Expect = 5.1
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 359 FYNELRVAPEEHPVLLTE--APLNPKVN 436
+Y L E+HP+LLT+ A L P+++
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRID 1426
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 25.0 bits (52), Expect = 5.1
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 340 LHVIPVSNDSVFDG-VFEGQDTSFALCLIST*ESFC 236
+ ++ V N+ F G ++ DT+FAL L+S ++C
Sbjct: 560 VEILSVDNNGCFLGDIYVNHDTNFALKLLSQGLAWC 595
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 5.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 378 SPPRNTQSCSLRLPSTPRS 434
SPP++T+ S R PS P S
Sbjct: 285 SPPQSTRPSSTRFPSVPLS 303
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 235 PIPTITP*WRGLPTIEGNSARGASSPAKPAL 143
P+PT P LPT N+ + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 126 NGSGMCKAGFAGDDAPRAEFPSIV 197
N G+ ++GF ++ R++FPS V
Sbjct: 404 NACGVTRSGFEAENPFRSDFPSTV 427
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.8 bits (44), Expect(2) = 8.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 281 ILTLKYPIEHGIVTN 325
I+T YP HGIV+N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 8.6
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 320 TNWDDMEKIWHHTFYNELRVAPEEHP 397
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.2 bits (50), Expect = 8.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 159 GDDAPRAEFPSIVGRPRHQGVMVGM 233
G+ PRA F ++ P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 24.2 bits (50), Expect = 8.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 146 LAHTGAIVYYQRGNFFVAHLELVF 75
L TGAIV Y G FF + L+F
Sbjct: 56 LFRTGAIVAYILGMFFTSSFMLLF 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,013
Number of Sequences: 5004
Number of extensions: 41720
Number of successful extensions: 131
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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