Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1215
(439 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 137 4e-33
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 137 4e-33
SB_56| Best HMM Match : Actin (HMM E-Value=0) 137 4e-33
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 137 4e-33
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 137 4e-33
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 6e-25
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 6e-13
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 57 6e-09
SB_54| Best HMM Match : Actin (HMM E-Value=0) 57 6e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 49 2e-06
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 49 2e-06
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 7e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 39 0.002
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 35 0.026
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.059
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.96
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 30 0.96
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 30 0.96
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 0.96
SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24) 29 1.3
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 29 1.3
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 29 1.7
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_20183| Best HMM Match : Astacin (HMM E-Value=2.2e-06) 27 5.1
SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9) 27 5.1
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 27 6.8
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 137 bits (331), Expect = 4e-33
Identities = 60/61 (98%), Positives = 60/61 (98%)
Frame = +2
Query: 257 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKVN 436
DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK N
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 116
Query: 437 R 439
R
Sbjct: 117 R 117
Score = 111 bits (268), Expect = 2e-25
Identities = 51/55 (92%), Positives = 53/55 (96%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAEFPSIVGRPRHQGVMVGMGQKDSYV 254
M D+E+AALVVDNGSGMCKAGFAGDDAPRA FPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 55
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 137 bits (331), Expect = 4e-33
Identities = 60/61 (98%), Positives = 60/61 (98%)
Frame = +2
Query: 257 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKVN 436
DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK N
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 115
Query: 437 R 439
R
Sbjct: 116 R 116
Score = 109 bits (261), Expect = 1e-24
Identities = 49/53 (92%), Positives = 52/53 (98%)
Frame = +3
Query: 96 DEEVAALVVDNGSGMCKAGFAGDDAPRAEFPSIVGRPRHQGVMVGMGQKDSYV 254
+++VAALVVDNGSGMCKAGFAGDDAPRA FPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 54
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 137 bits (331), Expect = 4e-33
Identities = 60/61 (98%), Positives = 60/61 (98%)
Frame = +2
Query: 257 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKVN 436
DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK N
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 115
Query: 437 R 439
R
Sbjct: 116 R 116
Score = 110 bits (264), Expect = 6e-25
Identities = 50/53 (94%), Positives = 52/53 (98%)
Frame = +3
Query: 96 DEEVAALVVDNGSGMCKAGFAGDDAPRAEFPSIVGRPRHQGVMVGMGQKDSYV 254
++EVAALVVDNGSGMCKAGFAGDDAPRA FPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 54
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 137 bits (331), Expect = 4e-33
Identities = 60/61 (98%), Positives = 60/61 (98%)
Frame = +2
Query: 257 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKVN 436
DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK N
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 116
Query: 437 R 439
R
Sbjct: 117 R 117
Score = 116 bits (279), Expect = 9e-27
Identities = 52/55 (94%), Positives = 54/55 (98%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAEFPSIVGRPRHQGVMVGMGQKDSYV 254
MCD++VAALVVDNGSGMCKAGFAGDDAPRA FPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 55
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 137 bits (331), Expect = 4e-33
Identities = 60/61 (98%), Positives = 60/61 (98%)
Frame = +2
Query: 257 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKVN 436
DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK N
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 116
Query: 437 R 439
R
Sbjct: 117 R 117
Score = 111 bits (268), Expect = 2e-25
Identities = 49/55 (89%), Positives = 53/55 (96%)
Frame = +3
Query: 90 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAEFPSIVGRPRHQGVMVGMGQKDSYV 254
M D+++AALV+DNGSGMCKAGFAGDDAPRA FPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 55
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 110 bits (264), Expect = 6e-25
Identities = 49/53 (92%), Positives = 52/53 (98%)
Frame = +3
Query: 96 DEEVAALVVDNGSGMCKAGFAGDDAPRAEFPSIVGRPRHQGVMVGMGQKDSYV 254
D++VAALV+DNGSGMCKAGFAGDDAPRA FPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 54
Score = 72.1 bits (169), Expect = 2e-13
Identities = 32/35 (91%), Positives = 32/35 (91%)
Frame = +2
Query: 257 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 361
DEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 70.5 bits (165), Expect = 6e-13
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +2
Query: 212 SGRDGRYGTEGLLCRDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPE 388
S + G + L+ DEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPR 103
Query: 389 EHPVLLTEAPLNPKVNR 439
VLLTE PLNP NR
Sbjct: 104 NTKVLLTEPPLNPMKNR 120
Score = 41.9 bits (94), Expect = 2e-04
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +3
Query: 108 AALVVDNGSGMCKAGFAGDDAPRAEFPSIVGRP 206
+ +V DNG+G K G+AG + P FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 57.2 bits (132), Expect = 6e-09
Identities = 26/39 (66%), Positives = 28/39 (71%)
Frame = +3
Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAEFPSIVGRPRHQ 215
E LV+D GS M K GFAGDDAP+ FP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 57.2 bits (132), Expect = 6e-09
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAEFPSIVGRPRHQ 215
+V+DNGSG CKAG + D++PR FP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 49.6 bits (113), Expect = 1e-06
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +2
Query: 341 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKVNR 439
K+W H F ++LRV E+ PVLLTEAPLNPK+NR
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNR 2161
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +3
Query: 84 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAEFPSIVGRPRHQGVMVG 230
FK+ A+V+DNG G+ K GFAGD PR P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/50 (46%), Positives = 28/50 (56%)
Frame = +2
Query: 257 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 406
DEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 288 DEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 40.3 bits (90), Expect = 7e-04
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = -3
Query: 212 MAGPSHDRGELGARSIISCETGLAHTGAIVYYQRGNFFV 96
MA + D GE G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 38.7 bits (86), Expect = 0.002
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 299 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKVNR 439
PI+ G++ +WD EKI + + ++ HP+L++EA N ++ R
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKR 49
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 35.1 bits (77), Expect = 0.026
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 389 EHPVLLTEAPLNPKVNR 439
+HPVLLTEAPLNP+ NR
Sbjct: 126 QHPVLLTEAPLNPRRNR 142
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 33.9 bits (74), Expect = 0.059
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = +2
Query: 215 GRDGRYGTEGLLCRDEAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 385
GR G + GL ++ S I L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 386 EEHPVLLTEAPLNPKVNR 439
HPV++TE NP R
Sbjct: 165 VNHPVIMTEPVCNPNYCR 182
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.9 bits (64), Expect = 0.96
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 187 GNSARGASSPAKPALHIPEPLSTT 116
GN+ R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 379
Score = 29.9 bits (64), Expect = 0.96
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 333 SSQLVTI--PCSMGYLRV-RIPLLLCASSLHKSPSVPYRP 223
S LV++ P S Y + RIP LC SL PS PY+P
Sbjct: 260 SPSLVSLQAPLSYSYKPLPRIPSSLCLLSLQAPPSYPYKP 299
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -2
Query: 339 SMSSQLVTIPCSMGYLRV---RIPLLLCASSLHKSPSVPYRP 223
SMS LV + Y RIP L SL SPS PY+P
Sbjct: 33 SMSLSLVYLQAPPSYPHEPLPRIPESLSLVSLQASPSYPYKP 74
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 29.9 bits (64), Expect = 0.96
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 187 GNSARGASSPAKPALHIPEPLSTT 116
GN+ R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 0.96
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 299 PIEHGIVTNWDDMEKIWHHTFYNE 370
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 102 EVAALVVDNGSGMCKAGFAGDDAPRA 179
++A LV+D G+ K GFA + APR+
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRS 257
>SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)
Length = 1592
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 424 VEGSLSEQDWVFLGGDTQLIVEGMMPNLLHVI 329
+ SL++Q+W + D Q+IVEG M N ++I
Sbjct: 1329 IRQSLTKQEWRWQMDDPQMIVEGAMQNHYNMI 1360
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 182 VPLDRGKAPPSGRDGRYGTEGLLCRDEAQSKRGILTLKYPIEHGIVTNW--DDMEKIWHH 355
V L + +GR+ G+ +CR +A ++TL + I G+ + D EK+W+H
Sbjct: 441 VTLSQNVVSVTGREESGGSGTQVCRKKAP----LITLSHVIRMGLALSLVSDVKEKVWYH 496
Query: 356 TFYN 367
T N
Sbjct: 497 TCPN 500
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 29.1 bits (62), Expect = 1.7
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Frame = -2
Query: 393 CSSGATRSSL*KV*CQIFSMSSQLVTIPCSMGYLRVRIPLLLCASSL--HKSPSVPYRPS 220
CS + + C + ++V CS + V + ++C+ H+ PS
Sbjct: 88 CSPSRAHVDVFPITCSCRCVPHRMVMSMCSPSRVYVDVSPIVCSCRCVPHRVLMSMCSPS 147
Query: 219 RPDGGAFPRSRGTRREEHHLLRNRPCTYRSH 127
R D FP + R HH+L + + R+H
Sbjct: 148 RADVDVFPITCSRRCVFHHVLMSMCSSSRAH 178
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 187 GNSARGASSPAKPALHIPEPLSTT 116
GN+ R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 321 VTIPCSMGYLRVRIPLLLCASSLHKSPSVP 232
V PC M LRVR+ C S LH + P
Sbjct: 60 VACPCCMSLLRVRVVCPCCMSVLHVRVACP 89
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 202 LPTIEGNSARGASSPAKPALHIPEPLSTTNAATSSSH 92
L IE ++ A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_20183| Best HMM Match : Astacin (HMM E-Value=2.2e-06)
Length = 230
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 285 RIPLLLCASSLHKSPSVPYRP 223
RIP L SL SPS PY+P
Sbjct: 80 RIPTSLSLISLQSSPSYPYKP 100
>SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)
Length = 334
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 285 RIPLLLCASSLHKSPSVPYRP 223
RIP L SL SPS PY+P
Sbjct: 57 RIPTSLSLISLQSSPSYPYKP 77
>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 403
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 285 RIPLLLCASSLHKSPSVPYRP 223
RIP L SL SPS PY+P
Sbjct: 73 RIPTSLSLVSLQASPSYPYKP 93
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 285 RIPLLLCASSLHKSPSVPYRP 223
RIP L SL SPS PY+P
Sbjct: 119 RIPTSLSLISLQASPSYPYKP 139
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 187 GNSARGASSPAKPALHIPEPLSTT 116
GN+ R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 185 PLDRGKAPPSGRDGRYGTEGLLCRDEAQSKRG 280
P DRG P G G G +G RD + +RG
Sbjct: 10 PGDRGPRGPPGEQGFSGVKGKEGRDGVKGERG 41
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 187 GNSARGASSPAKPALHIPEPLSTT 116
GN+ R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 87 KMCDEEVAALVVDNG-SGMCKAGFAGD 164
++CD++ + +N MCKAG+ GD
Sbjct: 487 RLCDKDAVCRLENNAIKCMCKAGYTGD 513
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,379,283
Number of Sequences: 59808
Number of extensions: 364117
Number of successful extensions: 1079
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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