Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1214
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.69 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.69 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          25   0.69 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.5  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +3

Query: 168 EFDEYGYEQDHIHHHM 215
           ++DE+G+E D +H++M
Sbjct: 521 KYDEFGHEVDLVHNYM 536


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +3

Query: 168 EFDEYGYEQDHIHHHM 215
           ++DE+G+E D +H++M
Sbjct: 521 KYDEFGHEVDLVHNYM 536


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +3

Query: 168 EFDEYGYEQDHIHHHM 215
           ++DE+G+E D +H++M
Sbjct: 147 KYDEFGHEVDLVHNYM 162


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 232 NKINITKTINCLHNT*TTLFSCIGQVYSLSILFMNIGY 345
           NKI+  + +N L+N   TL S  G +     +  NI +
Sbjct: 386 NKISALRALNDLYNVKNTLDSYNGSMEINQNIAQNIDH 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,134
Number of Sequences: 438
Number of extensions: 2120
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)