Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1214
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45290.1 68416.m04890 seven transmembrane MLO family protein ...    28   4.9  
At2g01740.1 68415.m00103 pentatricopeptide (PPR) repeat-containi...    28   4.9  
At1g09090.2 68414.m01015 respiratory burst oxidase protein B (Rb...    27   6.5  
At1g09090.1 68414.m01014 respiratory burst oxidase protein B (Rb...    27   6.5  

>At3g45290.1 68416.m04890 seven transmembrane MLO family protein /
           MLO-like protein 3 (MLO3) membrane protein Mlo3
           [Arabidopsis thaliana] gi|14091576|gb|AAK53796; similar
           to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221
           [Hordeum vulgare][Barley]
          Length = 508

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 403 ISHYLLFLNSY*LEFISKIILKYQMKISLCY 495
           I HY LFLN++ + FI  + + +Q  I+ CY
Sbjct: 362 ILHYTLFLNTFEMAFI--VWITWQFGINSCY 390


>At2g01740.1 68415.m00103 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 559

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 239 ILLARLSYHMVVYMILLVTVLVELGKEFDAQPNLNISPLSFSPDLL 102
           +LL  L+Y  ++Y +    ++VE  + FD   N  ISP S   DLL
Sbjct: 469 LLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLL 514


>At1g09090.2 68414.m01015 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 843

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 284 VVYVL*RQLIVFVMFILLARLSYHMVVYMILLVTVLV 174
           +VYVL   LIV   F+ L++  YH   +M L V VL+
Sbjct: 489 IVYVL---LIVHGYFVYLSKEWYHKTTWMYLAVPVLL 522


>At1g09090.1 68414.m01014 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 622

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 284 VVYVL*RQLIVFVMFILLARLSYHMVVYMILLVTVLV 174
           +VYVL   LIV   F+ L++  YH   +M L V VL+
Sbjct: 489 IVYVL---LIVHGYFVYLSKEWYHKTTWMYLAVPVLL 522


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,326,896
Number of Sequences: 28952
Number of extensions: 151496
Number of successful extensions: 298
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)