Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1213
         (520 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1PWN3 Cluster: Sensor protein; n=1; Candidatus Kueneni...    33   3.0  
UniRef50_Q663F3 Cluster: Plasmid replication protein; n=1; Yersi...    32   9.0  

>UniRef50_Q1PWN3 Cluster: Sensor protein; n=1; Candidatus Kuenenia
           stuttgartiensis|Rep: Sensor protein - Candidatus
           Kuenenia stuttgartiensis
          Length = 1225

 Score = 33.5 bits (73), Expect = 3.0
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 377 LYTHTFIP-HFPTILTDQCWDLEYIKNKKKPFIFIVIAVLLLMFFFCLIYLREIVLI 210
           ++ H F+P H    +  +  D  Y K KK+P +F  I + L+ FFF L  L  ++++
Sbjct: 1   MFFHIFLPIHLSVTIIKRERDNGYFKTKKRPLMFRSIRIKLI-FFFLLAVLTPLLVM 56


>UniRef50_Q663F3 Cluster: Plasmid replication protein; n=1; Yersinia
           pseudotuberculosis|Rep: Plasmid replication protein -
           Yersinia pseudotuberculosis
          Length = 328

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = -2

Query: 432 LFGINK*HKSQSLK-----FLKAPLYTYIYPSFSNNIDR 331
           +FG+NK H  QSLK       K P+YTY Y      IDR
Sbjct: 58  MFGVNKAHIHQSLKNAASSLGKKPIYTYEYNEKKKRIDR 96


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 293,019,617
Number of Sequences: 1657284
Number of extensions: 4011530
Number of successful extensions: 11339
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11315
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)