Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1213
         (520 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    24   0.70 
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   2.1  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   2.8  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      22   3.7  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   5.0  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -3

Query: 317 LEYIKNKKKPFIFIVIAVLLLMFFFCLIYLREIVL 213
           ++ I  + +  + +++  ++L FF CLI  R  +L
Sbjct: 277 IDNISLRARKQVVLMLGTVVLSFFLCLIPFRVFIL 311



 Score = 23.8 bits (49), Expect = 0.93
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 287 FIFIVIAVLLLMFFFCLI 234
           F+F +I +++L+  +C+I
Sbjct: 243 FLFFIIPLIILLILYCII 260


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 353 HFPTILTDQCWDLEYIKNKKKPFIFIVIAVLLLMFFF 243
           HF   + D  +   + K+K +PF+   I+++ L+F F
Sbjct: 214 HFVNYI-DDLFFFRFEKSKFEPFLISNISLVSLIFLF 249


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 308 IKNKKKPFIFIVIAVLLLMFFFCLIYLREI 219
           IK +K+  + +++  ++L FF CL+  R +
Sbjct: 284 IKYRKQ--VILMLGTVVLAFFICLLPFRAL 311


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 345 WKMRDKCMCIEE 380
           W+M   CMC +E
Sbjct: 81  WQMERSCMCCQE 92


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 344 TILTDQCWDLEYIKNKKKPFIFIVIAVLLLMFFFCLIYLREIVL 213
           ++  D C   E +      F F+V+ ++ L     LIY++ IV+
Sbjct: 193 SVCADLCLLSECVDLFNSLFGFLVLLLVALTTLQLLIYIQVIVI 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,081
Number of Sequences: 336
Number of extensions: 1297
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)