Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1213
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    28   0.96 
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   3.9  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 333 CQYCWKMRDKCMCIEELLGISRTVIYVICLFQINV 437
           C YC +   KC+C EE +GI    + +I L   N+
Sbjct: 90  CFYCSRKIIKCICNEEHVGIESVQLKLILLLCQNL 124


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 371 THTFIPHFPTILTDQCWDLEYIKNKKKPFIF 279
           T TFIP     +T     ++ IKNK KP  F
Sbjct: 554 TETFIPPVQNSITSNKEAVKPIKNKPKPISF 584


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 299 KKKPFIFIVIAVLLLMFFFCLI 234
           K  PFIFI ++V   + F+C++
Sbjct: 12  KLLPFIFIYLSVANKIMFYCIL 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,329,839
Number of Sequences: 5004
Number of extensions: 19741
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)