Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1213
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U00043-11|AAN65290.1|  641|Caenorhabditis elegans Hypothetical p...    27   6.1  
U00043-10|AAC77505.1|  779|Caenorhabditis elegans Hypothetical p...    27   6.1  
Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical
           protein F45F2.6 protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 324 TLVCQYCWKMRDKCMCIEELLGISRTVIYVICLFQI 431
           ++   Y +   D     +E++GI+ TV++ +CL  +
Sbjct: 363 SIAMHYIYNNSDMPRTADEVIGIAETVLFCVCLLAV 398


>U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical
           protein C15H9.3 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 356 PHFPTILTDQCWDLEYIKNKK-KPFIFIVIAVLLLMFFFCLIYLREIVLIY 207
           P FP I   + W     +NK    F F +  V+  + FFCL  L +I+++Y
Sbjct: 144 PEFPIIFHPEFWGWTEERNKPLVNFFFYLNYVVQGIVFFCL-GLTDILIVY 193


>U00043-11|AAN65290.1|  641|Caenorhabditis elegans Hypothetical
           protein T26A5.2b protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 359 IPHFPTILTDQCWDLEYIKNKKKPFIFIV 273
           IP     L  +CW+ E +  KK  FIF +
Sbjct: 264 IPFNTKFLLGKCWEAEGVLEKKADFIFAI 292


>U00043-10|AAC77505.1|  779|Caenorhabditis elegans Hypothetical
           protein T26A5.2a protein.
          Length = 779

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 359 IPHFPTILTDQCWDLEYIKNKKKPFIFIV 273
           IP     L  +CW+ E +  KK  FIF +
Sbjct: 402 IPFNTKFLLGKCWEAEGVLEKKADFIFAI 430


>Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical
           protein W07A8.5 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -3

Query: 287 FIFIVIAVLLLMFFFCLIY 231
           FIFI++A LLL+F F L++
Sbjct: 14  FIFIIVASLLLIFEFFLLF 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,149,094
Number of Sequences: 27780
Number of extensions: 105850
Number of successful extensions: 313
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)