Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1213
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   4.3  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   7.6  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   7.6  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 345 WKMRDKCMCIEE 380
           W+M   CMC +E
Sbjct: 69  WQMERSCMCCQE 80


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/35 (20%), Positives = 19/35 (54%)
 Frame = +3

Query: 348 KMRDKCMCIEELLGISRTVIYVICLFQINVFLSIA 452
           +M D C  ++      ++ +++ C++++N    IA
Sbjct: 108 EMIDSCSNVDSSDKCEKSFMFMKCMYEVNPIAFIA 142


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 146 LIIIFSYLLTLSLVSCQ 96
           ++I+F   LT+++V CQ
Sbjct: 6   ILILFILSLTITIVMCQ 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,246
Number of Sequences: 438
Number of extensions: 1160
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)