Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1213
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila...    29   1.9  
At4g22300.1 68417.m03225 phospholipase/carboxylesterase family p...    27   5.7  

>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
            CAF protein [Arabidopsis thaliana] GI:6102610; contains
            Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
            Helicase conserved C-terminal domain, PF03368: Domain of
            unknown function, PF00636: RNase3 domain, PF00035:
            Double-stranded RNA binding motif
          Length = 1676

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -3

Query: 377  LYTHTFIPHFPTILTDQCWDLEYIKNKKKPFIFIVIAVLLLMFFFC-LIYLREIVLIY 207
            L T  F   FP +   Q  DL  +    +    + ++  L  F FC  IYL E++  Y
Sbjct: 1314 LMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDY 1371


>At4g22300.1 68417.m03225 phospholipase/carboxylesterase family
           protein similar to acyl-protein thioesterase-1 [Homo
           sapiens] GI:9965372; contains Pfam profile PF02230:
           Phospholipase/Carboxylesterase family
          Length = 471

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 296 KKPFIFIVIAVLLLMFFFCLIYLRE 222
           KKP + + IA+L  +FFF   +L +
Sbjct: 247 KKPIVLLTIALLSSVFFFAFFFLNK 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,431,116
Number of Sequences: 28952
Number of extensions: 89284
Number of successful extensions: 244
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)