Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1212
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    29   0.41 
SPBC582.09 |pex11||peroxisomal biogenesis factor 11|Schizosaccha...    26   3.8  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   6.7  

>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 210 SRRRNVGCRRQVIASHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHS 356
           + R     R++ +AS K V  +          ++ TQH +  LKDV HS
Sbjct: 122 ANRMVANARKETVASEKRVNQLKKQLVDAETLLSSTQHQLTELKDVMHS 170


>SPBC582.09 |pex11||peroxisomal biogenesis factor
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 204 WRSRRRNVGCRRQVIASHKLVLSVCSPYFQEMFKMNP 314
           W+    N+   R++ +  K++  +C  YF  +   NP
Sbjct: 54  WKKLESNISFSRKLFSIGKVLDYICKVYFDSLKLQNP 90


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 257 MACNNLPSAANVTSTRSPRDSRP*KPADI 171
           M   ++P+A   +ST S RD  P  P D+
Sbjct: 345 MKDTSIPAAEPASSTTSARDQTPSTPKDV 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,194
Number of Sequences: 5004
Number of extensions: 41558
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)