Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1212
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 44 7e-05
07_01_1036 + 9021395-9021658,9024214-9024690 37 0.011
08_02_1310 - 26037025-26038074 33 0.10
10_08_0082 + 14713989-14714046,14714109-14714953 33 0.14
08_02_1251 - 25592537-25593380,25593589-25593893 33 0.14
06_01_1008 - 7853089-7854147 33 0.14
10_08_0059 + 14529885-14530991 33 0.18
08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546 33 0.18
07_01_0011 - 81696-81892,83345-83621,83841-84189,84280-84644 32 0.24
08_01_0027 - 195321-195932,197206-197415 32 0.31
08_01_0797 + 7711772-7712869 31 0.55
08_02_1304 - 26008105-26009070 31 0.73
10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886 30 0.96
08_01_0801 - 7750548-7751708 30 1.3
10_08_0129 - 15025076-15025858,15025951-15026283 29 1.7
10_08_0122 - 14982676-14983043,14983957-14985145 29 1.7
08_01_0199 + 1628158-1629192 29 1.7
10_08_0119 - 14952786-14953931,14954709-14954831 29 2.2
04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072 28 3.9
09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,989... 28 5.1
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 28 5.1
10_08_0087 + 14730936-14732027 27 6.8
10_08_0130 - 15032348-15033338,15033459-15033517 27 8.9
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566... 27 8.9
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 44.0 bits (99), Expect = 7e-05
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 243 VIASHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 416
V +HKL+LS+ S F +MF M + VF +DV A L+QFMY GE+ V EE
Sbjct: 362 VTHAHKLILSLWSMTFDKMFTNGMKESSASNVFFEDVPVEAFFLLIQFMYSGELKVDIEE 421
Query: 417 L 419
+
Sbjct: 422 I 422
>07_01_1036 + 9021395-9021658,9024214-9024690
Length = 246
Score = 36.7 bits (81), Expect = 0.011
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +3
Query: 246 IASHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEEL 419
+ +H+++L+ SP F+ M + M ++ I+ + DVS+ LR + +MY E + E++
Sbjct: 81 VPAHRVILASRSPVFRAMLENEMEESRSGIIKIYDVSYDVLRAFVHYMYTAEA-LLDEQM 139
Query: 420 AS 425
AS
Sbjct: 140 AS 141
>08_02_1310 - 26037025-26038074
Length = 349
Score = 33.5 bits (73), Expect = 0.10
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 240 QVIASHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQE 413
+ +H+ VL+ SP F+ M P V L+D+ +A R +L F+Y + +
Sbjct: 188 ETFRAHRAVLAARSPVFKAALFGSMAEATAPSVALRDMDPAAFRAVLHFIYTDALPDDID 247
Query: 414 ELASF 428
ELA F
Sbjct: 248 ELAGF 252
>10_08_0082 + 14713989-14714046,14714109-14714953
Length = 300
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +3
Query: 240 QVIASHKLVLSVCSPYFQE----MFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 407
Q +A+H+ VL+ SP F+ + K T V ++D+ + LL+FMY +
Sbjct: 139 QTLAAHRCVLAARSPVFKAELYGLMKEGGTAAGAVHIEDIEPRVFKVLLRFMYTDSLPEM 198
Query: 408 QEE 416
+EE
Sbjct: 199 EEE 201
>08_02_1251 - 25592537-25593380,25593589-25593893
Length = 382
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 252 SHKLVLSVCSPYFQEMFKMNPTQHPI--VFLKDVSHSALRDLLQFMYQGE 395
+H+ +L+VCSP F+ + + + + L D+ + LL FMY G+
Sbjct: 237 AHRALLAVCSPVFKALLLSSTAEAAACSITLNDIKPAMFEALLHFMYTGD 286
>06_01_1008 - 7853089-7854147
Length = 352
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 252 SHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQG 392
+HK++L+ SP F F M + V +KD+ S + +L F+Y G
Sbjct: 190 AHKIILAARSPVFMAEFFGPMKESSSQCVEIKDIEASVFKAMLHFIYTG 238
>10_08_0059 + 14529885-14530991
Length = 368
Score = 32.7 bits (71), Expect = 0.18
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 213 RRRNVGCRRQVIASHKLVLSVCSPYFQ-EMFKMNPTQH---PIVFLKDVSHSALRDLLQF 380
R R G + +A+H++VL+ SP F+ E+ P + ++ + D+ R LL +
Sbjct: 201 RVRGAGGEEETVAAHRVVLAARSPVFKAELLAGVPAKDGGGAVIQIDDMDAEVFRSLLHY 260
Query: 381 MY 386
MY
Sbjct: 261 MY 262
>08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546
Length = 290
Score = 32.7 bits (71), Expect = 0.18
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +3
Query: 249 ASHKLVLSVCSPYFQ-EMF-KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNV 404
A+HK+VL++ SP F+ E+F M ++ +KD+ + LL F+Y +++
Sbjct: 131 AAHKVVLAMRSPVFKAELFGPMREAGAQVLPIKDIQPDVFKALLHFIYTDSLSI 184
>07_01_0011 - 81696-81892,83345-83621,83841-84189,84280-84644
Length = 395
Score = 32.3 bits (70), Expect = 0.24
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +3
Query: 246 IASHKLVLSVCSPYFQEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 416
+ +HK +L+ SP F+ F NP H ++ ++DV + ++ F+Y E+ E
Sbjct: 197 VQAHKWILAARSPVFKAQFFGPIGNPDLHTVI-VEDVEPLVFKAMVNFIYSDEL-PSIHE 254
Query: 417 LASFISTAGTT 449
LA +ST +T
Sbjct: 255 LAGSVSTWTST 265
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 31.9 bits (69), Expect = 0.31
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 243 VIASHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQ 410
V+ +HK +L+ CSP F+ MF + + + + D+ + L+ F+Y G + + Q
Sbjct: 118 VLKAHKAILASCSPVFESMFLHDLKEKESSTININDMCLESCSALIGFIY-GTIKLDQ 174
>08_01_0797 + 7711772-7712869
Length = 365
Score = 31.1 bits (67), Expect = 0.55
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 249 ASHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMY 386
A+HKLVL+ SP F+ F +M + +KD+ S R LL F+Y
Sbjct: 204 AAHKLVLAARSPVFKAEFYGEMIERGTFSIDIKDMQPSVFRALLHFIY 251
>08_02_1304 - 26008105-26009070
Length = 321
Score = 30.7 bits (66), Expect = 0.73
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 252 SHKLVLSVCSPYFQE--MFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELAS 425
+H+ VL+ SP F+ + M P V L+D+ + R LL F+Y +V Q E +S
Sbjct: 167 AHRAVLAARSPVFRAELLGSMAEATMPCVTLRDIEPATFRALLHFVY---TDVLQIEGSS 223
Query: 426 FIST 437
ST
Sbjct: 224 STST 227
>10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886
Length = 334
Score = 30.3 bits (65), Expect = 0.96
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +3
Query: 228 GCRRQVIASHKLVLSVCSPYFQ-EMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEV 398
G + A+H+ VL+ SP F E+F + + +V + D+ + LL+FMY +
Sbjct: 166 GVGGETFAAHRCVLAAQSPVFSAELFGPMKDSDRAGVVRIDDMEAQVFKALLRFMYTDSL 225
Query: 399 NVKQEE 416
+EE
Sbjct: 226 PEMEEE 231
>08_01_0801 - 7750548-7751708
Length = 386
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +3
Query: 255 HKLVLSVCSPYFQ-EMFKM--NPTQHPIVFLKDVSHSALRDLLQFMYQGEVNV 404
HKLVL++ SP F+ E+ + P PI + D+ + R LLQF+Y + V
Sbjct: 215 HKLVLAMRSPVFKAELCGLLREPGTQPITIV-DMQPAVFRALLQFIYTDQFPV 266
>10_08_0129 - 15025076-15025858,15025951-15026283
Length = 371
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 240 QVIASHKLVLSVCSPYF-QEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQGE-VNV 404
+ A+H+LVL+V SP F E F K + ++ + D+ + LL F+Y + +
Sbjct: 176 ETFAAHRLVLAVRSPVFVAEHFGPMKEGVNVNDVIEINDMDAQVFKALLNFIYTDTLLEM 235
Query: 405 KQEELAS 425
QEE A+
Sbjct: 236 DQEEDAT 242
>10_08_0122 - 14982676-14983043,14983957-14985145
Length = 518
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 240 QVIASHKLVLSVCSPYF-QEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQGE-VNV 404
+ A+H+LVL+V SP F E F K + ++ + D+ + LL F+Y + +
Sbjct: 204 ETFAAHRLVLAVRSPVFVAEHFGPMKEGVNVNDVIEINDMDAQVFKALLNFIYTDTLLEM 263
Query: 405 KQEELAS 425
QEE A+
Sbjct: 264 DQEEDAT 270
>08_01_0199 + 1628158-1629192
Length = 344
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 234 RRQVIASHKLVLSVCSPYFQEMFKMNPTQH--PIVFLKDVSHSALRDLLQFMY 386
R Q A+H++VL++ SP F + +H P + + D+ LL+F+Y
Sbjct: 206 RGQPFAAHRIVLAMRSPVFMASLYGSMREHRAPRIAVDDMEPEVFDALLRFVY 258
>10_08_0119 - 14952786-14953931,14954709-14954831
Length = 422
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 240 QVIASHKLVLSVCSPYFQ-EMFK-MNPTQHPIVFLKDVSHSALRDLLQFMY 386
+ A+H+LVL+ SP F+ E+FK M ++ + ++ + LL F+Y
Sbjct: 258 ETFAAHRLVLAARSPVFKAELFKPMEEGTTDVIKIDNMDAQVFKALLVFIY 308
>04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072
Length = 414
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 276 CSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVN-VKQEEL 419
C P + F T++P+VFL+ + + DLLQ + V+ K+ EL
Sbjct: 253 CEPRKEIFFTERNTENPLVFLRFLVSTPWGDLLQIKFSRRVHRTKRLEL 301
>09_02_0496 -
9892242-9892499,9892956-9893045,9893046-9893094,
9893330-9893557,9894095-9894261,9894312-9894395,
9894614-9894820,9894919-9895251,9895371-9895513,
9895607-9895723,9895824-9895980,9896054-9896157,
9896272-9896432,9896518-9896707,9896732-9896834,
9896950-9897231,9897327-9897649,9897750-9897786,
9898109-9898162,9898292-9898368,9898449-9898502,
9898738-9898822,9900289-9900426,9900592-9900603
Length = 1150
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 373 YSLCIKVKLMLSKKN*HHLLVQPEQLQVKGLTGXQNEESS 492
Y++C+ + L L K+N + + Q++++ LTG E SS
Sbjct: 584 YTICLSI-LTLLKRNVREMSQETLQIKLENLTGYDQEPSS 622
>01_07_0111 -
41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 436 QPEQLQVKGLTGXQNEESSTPSKP 507
Q +++ L+G NEE STPS P
Sbjct: 581 QTSYIRILDLSGLSNEEQSTPSNP 604
>10_08_0087 + 14730936-14732027
Length = 363
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +3
Query: 240 QVIASHKLVLSVCSPYFQ-EMFKM--NPTQHPIVFLKDVSHSALRDLLQFMYQGEV-NVK 407
Q A+H+ VL+ SP F+ E++ + +V ++++ + LL+F+Y + +K
Sbjct: 203 QTFAAHRCVLAARSPVFRAELYGLMKEGDTAGVVCIEEMEAQVFKVLLRFLYTDSLPEMK 262
Query: 408 QEE 416
+EE
Sbjct: 263 EEE 265
>10_08_0130 - 15032348-15033338,15033459-15033517
Length = 349
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +3
Query: 240 QVIASHKLVLSVCSPYFQ-EMF---KMNPTQHPIVFLKDVSHSALRDLLQFMY 386
+ A+H+LVL+ SP F E+F K + T + I D+ R LL+F+Y
Sbjct: 166 ETFAAHRLVLAARSPVFMVELFGPMKESTTVNKIQIF-DMEAQVFRVLLKFIY 217
>03_05_0327 -
23154014-23154942,23155169-23155316,23155606-23156622,
23156753-23157217,23160258-23161247
Length = 1182
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 228 GCRRQVIASHKLVLSVCSPYFQEMFK 305
GC+ V+A+HKLV S S + EMF+
Sbjct: 662 GCQEAVLAAHKLVFS--SGWSDEMFE 685
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,065,791
Number of Sequences: 37544
Number of extensions: 251164
Number of successful extensions: 608
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -