Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1210
         (270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   1.4  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   2.5  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    24   4.3  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    23   7.5  
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    23   7.5  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    23   7.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   7.5  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    23   7.5  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    23   9.9  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    23   9.9  

>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 71  TTTLPTNVENAVADMLFGAG 12
           T TLPTN+   + DMLF  G
Sbjct: 674 TDTLPTNISFRIFDMLFCDG 693


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 73  DLAAWLAGDVPHAEWRRL 126
           D+  W+  D+ H+ W RL
Sbjct: 132 DIPKWIDMDIAHSNWNRL 149


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 113 SACGTSPASHAARSTTTLPTN-VENAVADM 27
           SA GT+PAS A    T +P   + N   DM
Sbjct: 664 SAHGTNPASAAMAGFTVIPVKCLNNGYLDM 693


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 10  SPAPNNMSATAFSTFV 57
           +PAP  +SA AF+TF+
Sbjct: 92  NPAPFGLSAFAFTTFL 107


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 216 PLANVFVRKIQV 181
           PL NVFVRK+++
Sbjct: 206 PLQNVFVRKVKI 217


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 32  DMLFGAGLCS 3
           D+LFG GLCS
Sbjct: 200 DLLFGGGLCS 209


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -2

Query: 104  GTSPASHAARSTTTLPTNVE-NAVADML 24
            GT  + HA     T P  VE N VA M+
Sbjct: 1639 GTRASKHANEKENTFPRGVENNLVAPMI 1666


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 22  NNMSATAFSTFVGNVVVDLAAWLAGDVP 105
           +N SA++  TFVG+  VDL       +P
Sbjct: 362 SNKSASSSETFVGSKNVDLTESAFDSIP 389


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 194 RTNTLASGGRRCCFLTGMLPSH 259
           R N +++GGR  CF+   L S+
Sbjct: 440 RWNEISTGGRFACFVIAQLFSN 461


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 194 RTNTLASGGRRCCFLTGMLPSH 259
           R N +++GGR  CF+   L S+
Sbjct: 441 RWNEISTGGRFACFVIAQLFSN 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 746,334
Number of Sequences: 5004
Number of extensions: 7893
Number of successful extensions: 33
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)