Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1210
(270 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039717-4|AAO21385.1| 303|Caenorhabditis elegans Abnormal daue... 25 7.3
AF039717-3|AAK82917.1| 530|Caenorhabditis elegans Abnormal daue... 25 7.3
AF039717-2|AAK82918.1| 508|Caenorhabditis elegans Abnormal daue... 25 7.3
AF039717-1|AAK82919.1| 510|Caenorhabditis elegans Abnormal daue... 25 7.3
AF032112-1|AAC47803.1| 510|Caenorhabditis elegans DAF-16 protein. 25 7.3
AF020344-1|AAB84392.1| 530|Caenorhabditis elegans fork head-rel... 25 7.3
AF020343-1|AAB84391.1| 508|Caenorhabditis elegans fork head-rel... 25 7.3
AF020342-1|AAB84390.1| 510|Caenorhabditis elegans fork head-rel... 25 7.3
Z72507-13|CAH60789.1| 515|Caenorhabditis elegans Hypothetical p... 25 9.7
Z72507-10|CAA96629.1| 531|Caenorhabditis elegans Hypothetical p... 25 9.7
U41296-1|AAA93297.1| 579|Caenorhabditis elegans Steroid hormone... 25 9.7
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 25 9.7
AY204170-1|AAO39174.1| 579|Caenorhabditis elegans nuclear recep... 25 9.7
AF067936-1|AAC19212.2| 579|Caenorhabditis elegans Nuclear hormo... 25 9.7
>AF039717-4|AAO21385.1| 303|Caenorhabditis elegans Abnormal dauer
formation protein16, isoform e protein.
Length = 303
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 110 ACGTSPASHAARSTTTLPTNVEN 42
+CG A H S++ LP ++EN
Sbjct: 247 SCGIVAAQHTVASSSALPIDLEN 269
>AF039717-3|AAK82917.1| 530|Caenorhabditis elegans Abnormal dauer
formation protein16, isoform a protein.
Length = 530
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 110 ACGTSPASHAARSTTTLPTNVEN 42
+CG A H S++ LP ++EN
Sbjct: 474 SCGIVAAQHTVASSSALPIDLEN 496
>AF039717-2|AAK82918.1| 508|Caenorhabditis elegans Abnormal dauer
formation protein16, isoform b protein.
Length = 508
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 110 ACGTSPASHAARSTTTLPTNVEN 42
+CG A H S++ LP ++EN
Sbjct: 452 SCGIVAAQHTVASSSALPIDLEN 474
>AF039717-1|AAK82919.1| 510|Caenorhabditis elegans Abnormal dauer
formation protein16, isoform c protein.
Length = 510
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 110 ACGTSPASHAARSTTTLPTNVEN 42
+CG A H S++ LP ++EN
Sbjct: 454 SCGIVAAQHTVASSSALPIDLEN 476
>AF032112-1|AAC47803.1| 510|Caenorhabditis elegans DAF-16 protein.
Length = 510
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 110 ACGTSPASHAARSTTTLPTNVEN 42
+CG A H S++ LP ++EN
Sbjct: 454 SCGIVAAQHTVASSSALPIDLEN 476
>AF020344-1|AAB84392.1| 530|Caenorhabditis elegans fork
head-related transcriptionfactor DAF-16b protein.
Length = 530
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 110 ACGTSPASHAARSTTTLPTNVEN 42
+CG A H S++ LP ++EN
Sbjct: 474 SCGIVAAQHTVASSSALPIDLEN 496
>AF020343-1|AAB84391.1| 508|Caenorhabditis elegans fork
head-related transcriptionfactor DAF-16a2 protein.
Length = 508
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 110 ACGTSPASHAARSTTTLPTNVEN 42
+CG A H S++ LP ++EN
Sbjct: 452 SCGIVAAQHTVASSSALPIDLEN 474
>AF020342-1|AAB84390.1| 510|Caenorhabditis elegans fork
head-related transcriptionfactor DAF-16a1 protein.
Length = 510
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 110 ACGTSPASHAARSTTTLPTNVEN 42
+CG A H S++ LP ++EN
Sbjct: 454 SCGIVAAQHTVASSSALPIDLEN 476
>Z72507-13|CAH60789.1| 515|Caenorhabditis elegans Hypothetical
protein F17C11.7b protein.
Length = 515
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 34 ATAFSTFVGNVVVDLAAWLAGDVPHAEWRRLV 129
ATAF+ G + + WLA V ++W R +
Sbjct: 444 ATAFALVFGPIQLYSTLWLAPVVKKSQWGRKI 475
>Z72507-10|CAA96629.1| 531|Caenorhabditis elegans Hypothetical
protein F17C11.7a protein.
Length = 531
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 34 ATAFSTFVGNVVVDLAAWLAGDVPHAEWRRLV 129
ATAF+ G + + WLA V ++W R +
Sbjct: 460 ATAFALVFGPIQLYSTLWLAPVVKKSQWGRKI 491
>U41296-1|AAA93297.1| 579|Caenorhabditis elegans Steroid hormone
receptor-like proteinprotein.
Length = 579
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +1
Query: 1 KEQSPAPNNMSATAFSTFVGNVVVDLAAWLAGDVPH 108
KE P+ T GN+ D A+W+ D H
Sbjct: 339 KEPLEVPSTEGMIQLPTEYGNLPADYASWIPQDYGH 374
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 1 KEQSPAPNNMSATAFSTFVGNVVVDLAAWLAGDVPHAEWRRLVSC 135
++ + P + + FVG +V + A+L EWR L+ C
Sbjct: 70 RDLATKPTAVRQFGYLLFVGGFIVIVVAFLGCCGAAKEWRPLLCC 114
>AY204170-1|AAO39174.1| 579|Caenorhabditis elegans nuclear receptor
NHR-47 protein.
Length = 579
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +1
Query: 1 KEQSPAPNNMSATAFSTFVGNVVVDLAAWLAGDVPH 108
KE P+ T GN+ D A+W+ D H
Sbjct: 339 KEPLEVPSTEGMIQLPTEYGNLPADYASWIPQDYGH 374
>AF067936-1|AAC19212.2| 579|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 47 protein.
Length = 579
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +1
Query: 1 KEQSPAPNNMSATAFSTFVGNVVVDLAAWLAGDVPH 108
KE P+ T GN+ D A+W+ D H
Sbjct: 339 KEPLEVPSTEGMIQLPTEYGNLPADYASWIPQDYGH 374
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,320,230
Number of Sequences: 27780
Number of extensions: 48770
Number of successful extensions: 157
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -