Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1210
         (270 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   4.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   6.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    19   8.2  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 110 ACGTSPASHAARSTTTLPTNVEN 42
           AC   P+S A  +T+   T  +N
Sbjct: 350 ACAAEPSSDAVSTTSGTTTVTDN 372


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 243 PVRKQHLLPPLANVFVR 193
           PVRK  L   +A+VF+R
Sbjct: 262 PVRKATLFLNMASVFMR 278


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 101 TSPASHAARSTTTLPTNVENAVA 33
           T+  +    +TTT P   +NA A
Sbjct: 664 TTTTTTTTTTTTTTPNTTQNASA 686


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 46  STFVGNVVVDL 78
           +TF+ N+ VDL
Sbjct: 187 NTFIANIAVDL 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,245
Number of Sequences: 438
Number of extensions: 567
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5138079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)