BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1208 (641 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_04_0203 - 14828009-14828110,14828171-14828269,14828375-148284... 31 1.0 12_01_0196 + 1451166-1451443,1453035-1453478,1453569-1454145 28 5.5 02_03_0143 + 15685242-15686298,15688167-15688265,15688998-156890... 28 5.5 11_01_0280 + 2080527-2080673,2081585-2081677,2081767-2081928,208... 27 9.6 >11_04_0203 - 14828009-14828110,14828171-14828269,14828375-14828461, 14828733-14829111,14829214-14829377,14829544-14829636, 14829843-14829989,14830065-14830166,14830392-14830490, 14830669-14830803,14830928-14831006,14831111-14831186, 14831281-14831370,14831723-14831798,14831880-14831914, 14832303-14832377,14832468-14832840 Length = 736 Score = 30.7 bits (66), Expect = 1.0 Identities = 15/23 (65%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Frame = +2 Query: 566 RSTPTNAI-IIFAPHYAPLPVGT 631 R PTNAI I FAPH PVGT Sbjct: 560 RDNPTNAIPIAFAPHLVSSPVGT 582 >12_01_0196 + 1451166-1451443,1453035-1453478,1453569-1454145 Length = 432 Score = 28.3 bits (60), Expect = 5.5 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +1 Query: 127 AFLKNLKTWRFKKGLNIEAIAFNVVYPCRFE 219 A L+ L WR + GLNIE AF YP F+ Sbjct: 146 ASLQLLSRWRHEVGLNIEIGAFLKKYPHIFD 176 >02_03_0143 + 15685242-15686298,15688167-15688265,15688998-15689072, 15689309-15689364,15689786-15689875 Length = 458 Score = 28.3 bits (60), Expect = 5.5 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +1 Query: 127 AFLKNLKTWRFKKGLNIEAIAFNVVYPCRFE 219 A L+ L WR + GLNIE AF YP F+ Sbjct: 86 ASLQLLSRWRHEVGLNIEIGAFLKKYPHIFD 116 >11_01_0280 + 2080527-2080673,2081585-2081677,2081767-2081928, 2082375-2082506,2083136-2083170,2083769-2083868, 2083990-2084283 Length = 320 Score = 27.5 bits (58), Expect = 9.6 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = -2 Query: 622 RKRGIMRSENNNGICWSGAGLSAPRAHRPH 533 +K ++ EN +G CW G S R PH Sbjct: 179 KKFMLLSVENGSGFCWGGKANSYIRGSGPH 208 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,332,392 Number of Sequences: 37544 Number of extensions: 282901 Number of successful extensions: 757 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 736 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 757 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1584867848 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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