Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1208
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0203 - 14828009-14828110,14828171-14828269,14828375-148284...    31   1.0  
12_01_0196 + 1451166-1451443,1453035-1453478,1453569-1454145           28   5.5  
02_03_0143 + 15685242-15686298,15688167-15688265,15688998-156890...    28   5.5  
11_01_0280 + 2080527-2080673,2081585-2081677,2081767-2081928,208...    27   9.6  

>11_04_0203 -
           14828009-14828110,14828171-14828269,14828375-14828461,
           14828733-14829111,14829214-14829377,14829544-14829636,
           14829843-14829989,14830065-14830166,14830392-14830490,
           14830669-14830803,14830928-14831006,14831111-14831186,
           14831281-14831370,14831723-14831798,14831880-14831914,
           14832303-14832377,14832468-14832840
          Length = 736

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/23 (65%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 566 RSTPTNAI-IIFAPHYAPLPVGT 631
           R  PTNAI I FAPH    PVGT
Sbjct: 560 RDNPTNAIPIAFAPHLVSSPVGT 582


>12_01_0196 + 1451166-1451443,1453035-1453478,1453569-1454145
          Length = 432

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 127 AFLKNLKTWRFKKGLNIEAIAFNVVYPCRFE 219
           A L+ L  WR + GLNIE  AF   YP  F+
Sbjct: 146 ASLQLLSRWRHEVGLNIEIGAFLKKYPHIFD 176


>02_03_0143 +
           15685242-15686298,15688167-15688265,15688998-15689072,
           15689309-15689364,15689786-15689875
          Length = 458

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 127 AFLKNLKTWRFKKGLNIEAIAFNVVYPCRFE 219
           A L+ L  WR + GLNIE  AF   YP  F+
Sbjct: 86  ASLQLLSRWRHEVGLNIEIGAFLKKYPHIFD 116


>11_01_0280 +
           2080527-2080673,2081585-2081677,2081767-2081928,
           2082375-2082506,2083136-2083170,2083769-2083868,
           2083990-2084283
          Length = 320

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 622 RKRGIMRSENNNGICWSGAGLSAPRAHRPH 533
           +K  ++  EN +G CW G   S  R   PH
Sbjct: 179 KKFMLLSVENGSGFCWGGKANSYIRGSGPH 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,332,392
Number of Sequences: 37544
Number of extensions: 282901
Number of successful extensions: 757
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)