Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1208
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical pr...    32   0.40 
U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical p...    28   4.9  
U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AC024831-2|AAN63422.1|  502|Caenorhabditis elegans Hypothetical ...    28   6.5  
AC024831-1|AAN63421.1|  500|Caenorhabditis elegans Hypothetical ...    28   6.5  

>U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical
           protein T19A5.5 protein.
          Length = 511

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -1

Query: 173 FRPFLNLQVFKFFKKAQCIFEC-PK 102
           F  FLNLQ+F++  + +CIF+C PK
Sbjct: 97  FATFLNLQLFRYSVQPRCIFQCSPK 121


>U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical
           protein F45F2.1 protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 27  ISFDYHNCIIYGGSYVHSIIGIALWLWTFKNTLCFLK 137
           + F YH  I+Y G  +   I + LW+W    +LC  K
Sbjct: 61  VEFHYHRMIVYFG--LSHTIAVNLWIWA---SLCIAK 92


>U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical
           protein C02F12.8 protein.
          Length = 687

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 113 ECPKPESNSNYRMNIASTIDNTIMI 39
           +CP P  N  Y+ N+ ST+D +  +
Sbjct: 95  QCPNPYQNCGYQNNLVSTLDASFKV 119


>AC024831-2|AAN63422.1|  502|Caenorhabditis elegans Hypothetical
           protein Y55F3C.7b protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 331 HITYYICTFLAITEVFGFDIEV 396
           ++ YY+C FLA+  + GF + +
Sbjct: 335 NLLYYLCIFLAVCSIVGFTMNI 356


>AC024831-1|AAN63421.1|  500|Caenorhabditis elegans Hypothetical
           protein Y55F3C.7a protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 331 HITYYICTFLAITEVFGFDIEV 396
           ++ YY+C FLA+  + GF + +
Sbjct: 335 NLLYYLCIFLAVCSIVGFTMNI 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,353,139
Number of Sequences: 27780
Number of extensions: 251321
Number of successful extensions: 694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)