Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1208
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16190.1 68417.m02457 cysteine proteinase, putative contains ...    30   1.5  
At2g21430.1 68415.m02550 cysteine proteinase A494, putative / th...    28   4.6  

>At4g16190.1 68417.m02457 cysteine proteinase, putative contains
           similarity to papain-like cysteine proteinase isoform I
           GI:7381219 from [Ipomoea batatas]
          Length = 373

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 622 RKRGIMRSENNNGICWSGAGLSAPRA-HRPHILVTPIIIHSSRRQLADC 479
           R++G +    N G+C S    SA  A    H L T  ++  S +QL DC
Sbjct: 147 REQGAVTPVKNQGMCGSCWSFSAIGALEGAHFLATKELVSLSEQQLVDC 195


>At2g21430.1 68415.m02550 cysteine proteinase A494, putative / thiol
           protease, putative identical to SP:P43295 Probable
           cysteine proteinase A494 precursor [Arabidopsis
           thaliana]; strong similarity to cysteine proteinase
           RD19A (thiol protease) GI:435618, SP:P43296 from
           [Arabidopsis thaliana]
          Length = 361

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -2

Query: 622 RKRGIMRSENNNGICWSGAGLSAPRA-HRPHILVTPIIIHSSRRQLADC 479
           R RG +    N G C S    S   A    H L T  ++  S +QL DC
Sbjct: 139 RDRGAVTPVKNQGSCGSCWSFSTTGALEGAHFLATGKLVSLSEQQLVDC 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,342,960
Number of Sequences: 28952
Number of extensions: 223844
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)