Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1206
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0239 - 21794691-21795986 33 0.27
09_06_0081 + 20745627-20748144,20748211-20748308 29 2.5
06_01_0623 + 4536817-4536868,4537129-4537328,4537401-4537609,453... 29 3.3
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 29 4.3
06_01_0740 - 5473895-5474061,5474153-5474399,5475207-5475336,547... 29 4.3
01_06_0153 - 27044553-27044669,27044842-27044964,27045066-270451... 29 4.3
09_04_0353 + 16915618-16916934 28 5.7
06_01_1013 - 7931756-7935109 28 5.7
02_01_0559 - 4113937-4114113,4115305-4115853 28 5.7
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422... 28 7.6
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 28 7.6
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 28 7.6
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728... 28 7.6
>09_06_0239 - 21794691-21795986
Length = 431
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = +2
Query: 248 CINSAISPVVATTYHGKTPLLAS---TSYVSSTPLISQPIAYSAHFIK 382
C +S+ +P + + G +P LA+ T+ +STP+++ P+ S +F+K
Sbjct: 218 CFSSSGAPGSSAVFLGGSPELATNATTTPAASTPMVADPVLKSGYFVK 265
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.5 bits (63), Expect = 2.5
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Frame = +2
Query: 239 YRSCINSAISPVVATTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYI- 415
Y +S+ +P T G TPLL PL+ P A + H + W VS
Sbjct: 32 YGGASSSSTAPAAPTITRGPTPLLLLVVPSVPAPLVPAPPAPAPHLVVPHG-GWTVSPTT 90
Query: 416 ---------APSSYITPNTYIASGPLGATTYTTPFVQTVP 508
A SS P T IA A TTP+V +P
Sbjct: 91 DNDRFGDGGASSSTAAPLTPIAH---SAPPETTPYVPALP 127
>06_01_0623 +
4536817-4536868,4537129-4537328,4537401-4537609,
4538531-4538954
Length = 294
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 526 VMQSMRRHGLHEGCCVGSGSKRATCDVGVG-SDVGAR 419
++ +RRHG H C G +K TC G G +DV R
Sbjct: 205 LLSQLRRHGAHGWCGPGVVTKHGTC-AGTGHTDVAKR 240
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 438 PTPTS-QVALLEPLPTQHPSCRPCRRIDCITSRRNSSDQEEVCTRSWPQLTPAPTTYTAC 614
P P+S V + LP +H C + + RN+ + ++ T + P TP P A
Sbjct: 899 PPPSSPSVRRVRSLPARHAGCDD---VSLVEKFRNAMAKRDLPTAAVPPTTPPPAAAAAA 955
Query: 615 SA 620
+A
Sbjct: 956 AA 957
>06_01_0740 -
5473895-5474061,5474153-5474399,5475207-5475336,
5475874-5475951,5476192-5476337,5476661-5476906,
5477498-5477746,5478356-5478493,5479015-5479113,
5479456-5479641,5480477-5480896
Length = 701
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 501 PCRRIDCITSRRNSSDQEEVCTRSWPQLTPAPTTYTACSARS 626
P R + R+ ++ + + S P TPAPT YT+ + S
Sbjct: 18 PTRSVSMCIPVRDDIYEDSIISHSGPIFTPAPTQYTSVAIPS 59
>01_06_0153 -
27044553-27044669,27044842-27044964,27045066-27045161,
27045323-27045370,27046360-27046458,27046554-27046592,
27047032-27047133,27047225-27047347,27047535-27047783
Length = 331
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 411 TSLLAPTSLPTPTSQVALLEPLPTQHPSCRPCRRI 515
T+ L P+SLP P + L P P P+ RR+
Sbjct: 12 TAHLLPSSLPLPLASAPTLAPSPAASPASDSYRRV 46
>09_04_0353 + 16915618-16916934
Length = 438
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 248 CINSAISPVVATTYHGKTPLLASTSYVSSTPLISQP 355
C+ S +SP + Y G L ST+ SS P+ S P
Sbjct: 233 CLTSFMSPATSRLYFGAYATLNSTNTSSSGPVQSTP 268
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 426 PTSLPTPTSQVALLEPLPTQHPSCRPCRRIDC 521
P PTP+ L P P HP+ C DC
Sbjct: 579 PCGTPTPSCPHQCLVPQPCGHPATHQCHFGDC 610
>02_01_0559 - 4113937-4114113,4115305-4115853
Length = 241
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +2
Query: 401 PVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPSHRLHH 526
P PSSY N AS P T T FV P LHH
Sbjct: 137 PGQLFHPSSYAPVNAMPASPPPPQPTTTWDFVSWDPFSSLHH 178
>12_02_0849 - 23640091-23640279,23640537-23640677,23640756-23642203,
23642300-23642372,23642452-23642572,23642689-23642791,
23642979-23643052,23643140-23643285,23643368-23643476,
23643580-23643704,23643989-23644342,23644440-23644503,
23644581-23645032
Length = 1132
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 438 PTPTSQVALLEPLPTQHPSCRPCRRIDCITSRRNSSDQEEVCTRSWPQLTPAPT 599
P PT + +++EP+PT+ P I+ + R E V TR + P PT
Sbjct: 887 PVPTRKPSVIEPVPTRKPMA-----IEPVVPTRKPIVIEPVPTRKPIVIEPVPT 935
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 393 HNGP*ATSLLAPTSLPTPTSQVALLEPLPTQHPS 494
H+ P PT+ P+P LL+P P +PS
Sbjct: 307 HSAPLLQPFPLPTASPSPPYGTPLLQPFPPPNPS 340
>06_03_0850 -
25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -2
Query: 547 SDELRREVMQSMRRHGLHEGCCVGSGSKRATCDVGVGSDVGARSD 413
SDE RR + + R G G G+ R D+G G D D
Sbjct: 133 SDERRRPLKRLKRGQNARGGSGSGKGNVRTLSDLGGGKDSAGSED 177
>06_03_0794 -
24671955-24672362,24672469-24672505,24672804-24672858,
24674044-24674167,24674670-24674903
Length = 285
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 389 SPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFV 496
+PQ + A TP + SGP G TTYT FV
Sbjct: 2 TPQRSPAAAAAGGGGTPALHYLSGPYGDTTYTKVFV 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,169,200
Number of Sequences: 37544
Number of extensions: 345286
Number of successful extensions: 1191
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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