Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1206
(659 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098) 30 1.9
SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39) 29 4.4
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_242| Best HMM Match : AFP (HMM E-Value=0.45) 29 4.4
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_27488| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_5124| Best HMM Match : VWD (HMM E-Value=0.0096) 28 5.9
SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39) 28 5.9
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 28 5.9
SB_24975| Best HMM Match : ET (HMM E-Value=1) 28 7.7
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 7.7
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 31.5 bits (68), Expect = 0.63
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 299 TPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTY-IASGPLGAT 475
TP ST STP + + I +P P + AP + ITP+T S P +
Sbjct: 137 TPSTPSTPSTPSTPSTPSTPSTPSTPITPGTPSTPSTPSAPGTPITPSTLSTPSTPSTPS 196
Query: 476 TYTTPFVQTVPS 511
T +TP + PS
Sbjct: 197 TRSTPSTPSTPS 208
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 299 TPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTY-IASGPLGAT 475
TP ST + +TP + + I +P P + AP + ITP+T S P +
Sbjct: 687 TPSTPSTPSMPNTPSTPSTPSTPSTPITPGTPSTPSTPSAPGTPITPSTLSTPSTPSTPS 746
Query: 476 TYTTPFVQTVPS 511
T +TP + PS
Sbjct: 747 TRSTPSTPSTPS 758
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +2
Query: 299 TPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATT 478
TP T STP + + I +P P ++ PS+ TP+T S P +T
Sbjct: 26 TPSTPRTPSTPSTPCTPSTPSTPSTPITPSTPSTPCTHSTPSAPSTPST--PSTPCTPST 83
Query: 479 YTTPFVQTVPS 511
+TP + PS
Sbjct: 84 PSTPSTPSTPS 94
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +2
Query: 245 SCINSAISP-VVATTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAP 421
S + I+P ++T TP ST STP ++ + +P P + P
Sbjct: 175 SAPGTPITPSTLSTPSTPSTPSTRSTPSTPSTPSTPSTLSMPSTPSMPNTPSTPSTPSTP 234
Query: 422 SSYITPNTYIASGPLGATTYTTPFVQTVPS 511
S+ TP T S P +T +TP + + PS
Sbjct: 235 STLSTPIT--PSTPSTPSTPSTPSMPSTPS 262
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +2
Query: 245 SCINSAISP-VVATTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAP 421
S + I+P ++T TP ST STP ++ + +P P + P
Sbjct: 725 SAPGTPITPSTLSTPSTPSTPSTRSTPSTPSTPSTPSTLSMPSTPSMPNTPSTPSTPSTP 784
Query: 422 SSYITPNTYIASGPLGATTYTTPFVQTVPS 511
S+ TP T S P +T +TP + + PS
Sbjct: 785 STLSTPIT--PSTPSTPSTPSTPSMPSTPS 812
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +2
Query: 299 TPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASG-PLGAT 475
TP ST STP + S+ +P P + P + TP+T A G P +
Sbjct: 472 TPSTPSTPSTPSTPSTPSTPSTSSTPSTPSTPSTPSAPGTPGTPSTPSTPSAPGTPSTPS 531
Query: 476 TYTTPFVQTVPS 511
T +TP + PS
Sbjct: 532 TPSTPSTPSTPS 543
>SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = +2
Query: 278 ATTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSP-QWPVSYIAPSSYITPNTYIA 454
AT YHG TP +T Y +TP A + +P + Y S + Y
Sbjct: 326 ATPYHGATPYRGATPYRGATPYRGATPYRGATPYRGATPYRGATPYRGASPHHGATPYRR 385
Query: 455 SGPL-GATTY--TTPFVQTVP 508
S P G+T Y +TP+ ++P
Sbjct: 386 STPYHGSTPYRGSTPYRGSIP 406
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Frame = +2
Query: 272 VVATTYHGKTPLLASTSYVSSTPL-ISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTY 448
+ AT Y G TP ST STP ++ P + + + Y + Y Y
Sbjct: 294 LTATPYRGATPYSGSTLDRESTPYRLANPYDRATPYHGATPYRGATPYRGATPYRGATPY 353
Query: 449 IASGPL-GATTY--TTPFVQTVPSH 514
+ P GAT Y TP+ P H
Sbjct: 354 RGATPYRGATPYRGATPYRGASPHH 378
>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
Length = 620
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 299 TPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYI-ASGPL-GA 472
+PL +S+ SS+PL S S+ + SP S + SS +T ++ + +S PL +
Sbjct: 195 SPLTSSSPLTSSSPLTSSSPLTSSSPLTSSSPLTSPSPLTSSSPLTSSSPLTSSSPLTSS 254
Query: 473 TTYTTPFVQTVPS 511
+ T+P T PS
Sbjct: 255 SPLTSPSPLTSPS 267
>SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)
Length = 1123
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = -2
Query: 571 ERVQTSS*SDELRREVMQSMRRHGLHEGCCVGSGSKRATCDVGVGSDVGARSD---VAHG 401
ERV+ SS SDEL RE Q R H H+ + G++RA V S V + D V HG
Sbjct: 334 ERVKASSVSDELHRESHQRTRMH--HD--VIHHGNQRAMSVPDV-SSVSCKMDEKAVRHG 388
>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/85 (25%), Positives = 34/85 (40%)
Frame = +2
Query: 281 TTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASG 460
TT + TP T+ +STP + +Y+ S SY + +SY + +Y +
Sbjct: 23 TTSYTSTPSYTCTTSYTSTPSYTSTTSYT----PTPSYTCTTSYTSTTSYTSTTSYTPTT 78
Query: 461 PLGATTYTTPFVQTVPSHRLHHFPS 535
TT TP P+ PS
Sbjct: 79 SYTPTTSYTPTTSYTPTPSYTPTPS 103
>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
Length = 147
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = +2
Query: 215 CSLSACCVYRSCINSAISPVVATTYHGKTPLLASTSYVSSTPLI-SQPIAYSAHFIKKRS 391
C+ S C + S S T+Y T ++TSY S+T + + + S
Sbjct: 4 CTPSYTCT--TSYTSTTSYTCTTSYTSTTSYTSTTSYTSTTSYTPTTSYTCTTSYTSTTS 61
Query: 392 PQWPVSYIAPSSYITPNTYIASGPLGATTYTTP 490
SY + +SY + +Y ++ +T TP
Sbjct: 62 YTSTTSYTSTTSYTSTTSYTSTTSYRSTPSYTP 94
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 167 GLLYTVWLHSFHQEAVCSLSACCVYRSCINS 259
G Y V+ H+ + L C VY SCINS
Sbjct: 3761 GEFYLVYNHNMNVIVQVRLVTCFVYESCINS 3791
>SB_27488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 377 IKKRSPQWPVSY--IAPSSYITPNTYIAS-GPLGATTYTTPFVQTVPSHRLHHFP 532
++K W SY + P + + + AS GPLGA T T + VP H P
Sbjct: 487 LRKTGGVWTWSYNNLTPGAQLWESAAPASQGPLGAVTIATGRLVDVPDSGYHKLP 541
>SB_5124| Best HMM Match : VWD (HMM E-Value=0.0096)
Length = 264
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 167 GLLYTVWLHSFHQEAVCSLSACCVYRSCINS 259
G Y V+ H+ + L C VY SCINS
Sbjct: 60 GEFYLVYNHNMNVIVQVRLVTCFVYESCINS 90
>SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +3
Query: 414 SLLAPTSLPTPTSQVALLEPLPTQHPSCRPCRRIDCITSRRNSSDQEEVCTRSWPQLTPA 593
S+ P+ LP+ +SQ+ P HPS P +T + V S P +P
Sbjct: 110 SVSHPSYLPSQSSQLVTQSVTPVSHPSQSPQSVTQSVTQSVTQLVTQSVTPVSHPSQSPQ 169
Query: 594 PTT 602
T
Sbjct: 170 SVT 172
>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
Length = 1060
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Frame = +2
Query: 245 SCINSAISPVVATTYHGKTPLLASTSYV-----SSTPLISQPIAYSAHFIKKRSPQWPVS 409
+C + +P T+H TP T ++ +ST I+ P S H I +PQ +
Sbjct: 775 TCTHHLTTPETTCTHHISTPQTTGTHHITTPQTTSTHHITTPQTTSTHHI--TTPQTTST 832
Query: 410 YIAPSSYITPNTYIASGPLGATTY-TTPFVQTVPSHRL 520
+ + T +I + +T + TTP QT +H +
Sbjct: 833 HHITTPQTTSTHHITTPQTTSTHHITTP--QTTSTHHI 868
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = +2
Query: 266 SPVVATTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNT 445
+P +TYH TP ST ++++ P H I +PQ +Y S+ T +T
Sbjct: 936 TPQTTSTYHINTPQTTSTHHITT------PQTTGTHHI--TTPQTTSTYHI-STPQTTST 986
Query: 446 YIASGPLGATTYTTPFVQTVPSHRL 520
+ + P +TY QT +H +
Sbjct: 987 HHITTPQTTSTYHITTPQTTSTHHI 1011
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +2
Query: 245 SCINSAISPVVATTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPS 424
+ + + +PV TT +T +T+ T ++ + A S + +P P + +AP
Sbjct: 2220 AALETTAAPV--TTMVPETTAAPATTAALETSIVPETTAASETTVAPETPDAPATTLAPE 2277
Query: 425 SYITPNTYIA 454
+ P T +A
Sbjct: 2278 TTAAPETTVA 2287
>SB_24975| Best HMM Match : ET (HMM E-Value=1)
Length = 316
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +2
Query: 251 INSAISPVVATTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSY 430
+ +++S T + AS S +TPL ++ + +PQ P + + S
Sbjct: 99 VTASVSVTPNTPLSPSASVTASVSVTPNTPLSLSASVTASVSVTPNTPQSPSASVTASVS 158
Query: 431 ITPNTY 448
+TPN +
Sbjct: 159 VTPNIH 164
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/69 (24%), Positives = 27/69 (39%)
Frame = +2
Query: 278 ATTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIAS 457
ATT +T T+ S T + +P A + + P + +AP + P T +A
Sbjct: 1009 ATTAARETTAAPETTMASETTMAPEPTAAPETTVAPETTDAPATTLAPETTARPETTVAP 1068
Query: 458 GPLGATTYT 484
A T
Sbjct: 1069 ETTDAPAIT 1077
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,268,835
Number of Sequences: 59808
Number of extensions: 374197
Number of successful extensions: 1202
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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