Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1206
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70756-7|CAA94794.2| 199|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 29 2.9
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 29 2.9
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 29 2.9
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 29 3.9
AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical ... 29 3.9
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ... 28 6.8
U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical pr... 27 8.9
>Z70756-7|CAA94794.2| 199|Caenorhabditis elegans Hypothetical
protein T06E4.8 protein.
Length = 199
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 218 SLSACCVYRSCINSAISPVVATTYHGKTPLLASTSYVSSTPLISQPIAYSA-HFIKKRSP 394
+ SA + S + A + + A +P + +STP++S P+A +A I +P
Sbjct: 19 TFSALLLALSLFSGASAQLAAWPSQSYSPFYQALFGGASTPVLSAPVAKTAPSAIPLAAP 78
Query: 395 QWPVSYIAPSSYITPNTYIASGP 463
PV IA + + TP + + P
Sbjct: 79 ALPVP-IAAAPFFTPPAPVLAAP 100
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 408 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 494
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 408 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 494
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 408 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 494
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 408 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 494
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 419 PSSYIT-PNTYIASGPLGATTYTTPFVQTVPS 511
PS+ +T PNT + S P ATT TT V T PS
Sbjct: 346 PSTVVTKPNTVVTSSPTVATTPTT--VVTTPS 375
>AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical
protein Y47D7A.6 protein.
Length = 446
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = +2
Query: 284 TYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGP 463
TY + P +T+ +TP +P ++ + K+ P P PS TP+ + S
Sbjct: 267 TYPTEAPTYPTTASYETTPSYPEP----SYQVSKKYPIAPTYETTPSYETTPSYLVQSHA 322
Query: 464 LGATTYTTPFVQTVPS 511
P +T PS
Sbjct: 323 ASKKYPIAPTYETTPS 338
>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
protein Y20F4.4 protein.
Length = 1319
Score = 27.9 bits (59), Expect = 6.8
Identities = 27/107 (25%), Positives = 38/107 (35%)
Frame = +2
Query: 194 SFHQEAVCSLSACCVYRSCINSAISPVVATTYHGKTPLLASTSYVSSTPLISQPIAYSAH 373
S HQ + + S +A + V + K P + TS T I + A
Sbjct: 367 SEHQTEHARTGSSSHHESRSRAAAAAPVGASSQSKPPAPSPTS--RETDSIPEAPAEPIR 424
Query: 374 FIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPSH 514
I P+W S S T + GP YT PF + P+H
Sbjct: 425 NISPPQPRWTRSQSRGRSEATRRSP-PKGPSAPPAYTLPFGGSTPNH 470
>U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical
protein T10E10.4 protein.
Length = 966
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 212 VCSLSACCVYRSCINSAISPVVATTYHG 295
VC A C +C +S ISP+V+ + G
Sbjct: 730 VCPSGASCTMGTCCSSGISPIVSFSVPG 757
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,862,704
Number of Sequences: 27780
Number of extensions: 270653
Number of successful extensions: 857
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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