Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1206
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.48 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   2.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   2.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   2.0  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   2.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   4.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 426 PTSLPTPT--SQVALLEPLPTQHPSCRPCRRIDCITSRRNSSDQEEVCTR 569
           P  LPT    S++ ++E     HP+C+  R++   TS  +++  E +  R
Sbjct: 380 PKHLPTSLTKSKMEVMELSDLHHPNCKINRKVHHTTSSSSAAGGEGLADR 429


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 20  VDSVCFISCRGC*AWNLPDASRDVPN 97
           V+ +C I C     W LP  S + PN
Sbjct: 289 VNLICHILCMSDLHWQLPHNSTNPPN 314


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 14/66 (21%)
 Frame = +2

Query: 137 SQQRRASLTLGLLYTV----WLHSFHQEAVCSLSA-CC---------VYRSCINSAISPV 274
           S++RRA+ TLG++  V    WL  F    +      CC          +   +NSA++P+
Sbjct: 320 SKERRAARTLGVIMGVFVVCWLPFFLMYVIVPFCPDCCPSDRMVYFITWLGYVNSALNPL 379

Query: 275 VATTYH 292
           + T ++
Sbjct: 380 IYTIFN 385


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 14/66 (21%)
 Frame = +2

Query: 137 SQQRRASLTLGLLYTV----WLHSFHQEAVCSLSA-CC---------VYRSCINSAISPV 274
           S++RRA+ TLG++  V    WL  F    +      CC          +   +NSA++P+
Sbjct: 320 SKERRAARTLGVIMGVFVVCWLPFFLMYVIVPFCPDCCPSDRMVYFITWLGYVNSALNPL 379

Query: 275 VATTYH 292
           + T ++
Sbjct: 380 IYTIFN 385


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 14/66 (21%)
 Frame = +2

Query: 137 SQQRRASLTLGLLYTV----WLHSFHQEAVCSLSA-CC---------VYRSCINSAISPV 274
           S++RRA+ TLG++  V    WL  F    +      CC          +   +NSA++P+
Sbjct: 320 SKERRAARTLGVIMGVFVVCWLPFFLMYVIVPFCPDCCPSDRMVYFITWLGYVNSALNPL 379

Query: 275 VATTYH 292
           + T ++
Sbjct: 380 IYTIFN 385


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 510 RIDCITSRRNSSDQEEVCTRSWPQLTPAPTT 602
           +++ I+S  + SD+E       P++T  P T
Sbjct: 70  QLNIISSDHDDSDEEYAANSQPPRITSVPNT 100


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 429 TSLPTPTSQVALLEPLPTQHPSCRPCRRI-DCITSRRN 539
           TSL      +  +   P++ P C  C+R+   + S RN
Sbjct: 13  TSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRN 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,564
Number of Sequences: 438
Number of extensions: 2948
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)