Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1206
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62340.1 68414.m07034 subtilisin-like serine protease / abnor...    32   0.39 
At1g09710.1 68414.m01090 myb family transcription factor contain...    31   0.90 
At3g59690.1 68416.m06660 calmodulin-binding family protein simil...    29   2.1  
At2g46420.1 68415.m05777 expressed protein                             29   2.1  
At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative / UDP...    28   6.3  
At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containi...    28   6.3  

>At1g62340.1 68414.m07034 subtilisin-like serine protease / abnormal
           leaf shape1 (ALE1) identical to subtilisin-like serine
           protease [Arabidopsis thaliana] GI:16444944
          Length = 832

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +2

Query: 302 PLLASTSY--VSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGAT 475
           P+L   S+  +S T + +  IA     IK+ +P W  + IA +   T N Y ++G + + 
Sbjct: 604 PILTGRSFAILSGTSMATPHIAGIGALIKQLNPSWTPAMIASAISTTANEYDSNGEIISA 663

Query: 476 TYTTPFVQTVPSHRLHH 526
            Y     +  PS+   H
Sbjct: 664 EY-YELSRLFPSNHFDH 679


>At1g09710.1 68414.m01090 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 689

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 224 SACCVYRSCINSAISPVVATTYHGKTPLLASTSYVSSTPLISQPIAYSAHFIKKR 388
           S     RS  N  + PV+A++   K PL+A  S  SS    S P+A  +  +  +
Sbjct: 498 SVAASIRSLANGKLKPVMASSSSNKPPLIAPRSEGSSMLSASAPLASLSRIVSNQ 552


>At3g59690.1 68416.m06660 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 517

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 254 NSAISPVVATTYHGKTPLLASTSYVSSTPLISQPIAY-SAHFIKKRSPQWP 403
           NS+ + V +      +P + S  YVSS   IS  +AY   H+ K  SP+ P
Sbjct: 92  NSSSTSVASPLVRPASPKVPSQRYVSSPKPISPRVAYPQVHYPKPPSPKPP 142


>At2g46420.1 68415.m05777 expressed protein
          Length = 363

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 251 INSAISPVVATTYHGKTPLLASTSYVSSTPLISQPIAYSAHF 376
           INS    V+ TT    TP++   S +S  P+    +A S HF
Sbjct: 202 INSGNDMVIDTTMAEPTPMIPPNSGMSDMPVSPASVASSGHF 243


>At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 350

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
 Frame = +2

Query: 296 KTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPV---SYIAPSSYITPNTYIASGPL 466
           ++P+ A+  Y   T L  + I    H   +   +W +    Y  P     P+ YI   PL
Sbjct: 144 ESPISATNPY-GRTKLFIEEICRDVH---RSDSEWKIILLRYFNPVG-AHPSGYIGEDPL 198

Query: 467 GATTYTTPFVQTVPSHRLHH 526
           G      P+VQ V   R  H
Sbjct: 199 GVPNNLMPYVQQVAVGRRPH 218


>At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 650

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = +3

Query: 396 NGP*ATSLLAPTSLPTPTSQVALLEPLPTQHPSCRPCRRIDCITSRRNSSD 548
           + P   SL A  SLP P        PLP +H     CR  + IT   N SD
Sbjct: 34  SSPSGRSLSAEVSLPNPLPADVRGYPLPRRH---LICRATNLITGASNLSD 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,142,629
Number of Sequences: 28952
Number of extensions: 252932
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)