Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1205
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   1.4  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   7.3  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   7.3  

>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 62  EPIDIYNVNAATHLEILVLRSQYSYNDYPTLQTETRYCIRL 184
           EP+D+  VN    +  L   S  + +++PTL T + YC+ L
Sbjct: 768 EPVDLIMVN--DEVARLYQNSTRAVDEFPTLPTISCYCVAL 806


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 311  DFHGEGITSCNKNQNPQNYICVI 243
            DF  EGI S +K  +P ++IC +
Sbjct: 1173 DFSNEGIFSNHKALHPDDHICEV 1195


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 406 SVSSKVLNSSE*RNQNTEIHTYVFNTYIHTQYIFKHFIK 522
           SV+S++   S+  +   + + +  N Y H Q + KHF K
Sbjct: 347 SVNSRIQVVSDVDDDEDDENAFSQNYYSHLQMVAKHFSK 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,441
Number of Sequences: 5004
Number of extensions: 44215
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)