Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1205
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0564 - 4176177-4178096                                           31   0.46 
12_02_0594 - 20883859-20884200,20884250-20884528,20884931-208851...    29   3.2  
07_01_0973 - 8193002-8193261,8193388-8193485,8194117-8194401,819...    28   4.3  
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733     28   4.3  
04_03_0641 + 18261332-18262423                                         28   4.3  
04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031           28   5.6  
11_06_0545 + 24839536-24843421,24843871-24844310                       27   9.9  

>03_01_0564 - 4176177-4178096
          Length = 639

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -1

Query: 185 SAVCSNAFRFEGWGSRCNYTATLKLISQGGW----RHLRCRCLWARVTTYHQVG 36
           S  C+   R EG+GS+C +       S GG+        CRC   RV  Y  +G
Sbjct: 82  SVACAGVARHEGFGSQCEFLRAHPQCSSGGFVDYLGFFYCRCERFRVLGYAVLG 135


>12_02_0594 -
           20883859-20884200,20884250-20884528,20884931-20885106,
           20885254-20885725
          Length = 422

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 35  NLPGDKWLLEPIDIYNVNAATHLEILVL-RSQYSYNDYPTLQTETRYCIR 181
           NLP D  L +PI  YNVN    +    L R  +   D+   Q +   C+R
Sbjct: 13  NLPADLALRKPISQYNVNVRDEVRRAYLQRGPFQTPDHKFSQKDMSGCMR 62


>07_01_0973 -
           8193002-8193261,8193388-8193485,8194117-8194401,
           8195559-8195773,8196549-8197058
          Length = 455

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -1

Query: 314 IDFHGEGITSCNKNQNPQNYICVITGGRTSCESARVGTTALPISAVCSNAFRFEGWGS 141
           + FH     + +++ +P    C  +GG  SC +A  G   LP+  +     R   W S
Sbjct: 357 LTFHYLSTATRSRDADPSTPACPPSGGFNSCMNA-AGKLTLPVFGLAPYKLRSSVWSS 413


>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
          Length = 760

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +1

Query: 64  AHRHLQRKCRHPP*DISFKVAV*LQRLPHPSNRNALLHTAEIGRAVVPTRADSQEVLP 237
           A +H  +    PP       A   Q+ P P ++  + H A   R   PT   S E++P
Sbjct: 412 ARQHQPQPTPPPPQAAPIPAAPLQQQPPQPQHKETIHHEAVTPRRAPPTSGSSLELVP 469


>04_03_0641 + 18261332-18262423
          Length = 363

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 545 VKCFSGTYLIKCLNMYCVCMYVLNTYVC 462
           V CF G  L+KCL + C  +  +   VC
Sbjct: 143 VSCFCGLALLKCLQIQCEFLMSIPLQVC 170


>04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031
          Length = 488

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 123 RSIVTTTTPPFKPKRVTAYG*NRQGGGTYPCGLTR 227
           R +++T  PP  P RV A       GG   CG  R
Sbjct: 59  RHVLSTVPPPLAPFRVAAISDGFDSGGMAACGDAR 93


>11_06_0545 + 24839536-24843421,24843871-24844310
          Length = 1441

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -2

Query: 463  VFRYFDFFIPTSS--ILLMKLK*PLKAISKGRKKNTCRKIFLMKYVLNKCSRLTSTVKE* 290
            V +  D F  T S  I ++ L+   + + K   KN C ++F +KY+  + + +    KE 
Sbjct: 924  VVKLLDLFPTTESGWIKVLDLE-GCRGLKKKHLKNICNRVFQLKYLSLRNTDIAELPKEI 982

Query: 289  HRVIKIKT 266
            +++  ++T
Sbjct: 983  NKLQDLET 990


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,995,550
Number of Sequences: 37544
Number of extensions: 262573
Number of successful extensions: 543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)