Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1205
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49765| Best HMM Match : EGF (HMM E-Value=0)                         29   1.9  
SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   5.8  
SB_27075| Best HMM Match : rve (HMM E-Value=1.5e-16)                   28   5.8  
SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_49765| Best HMM Match : EGF (HMM E-Value=0)
          Length = 508

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -1

Query: 284 CNKNQNPQNYICVITGGRTSCESARVGTTALPISAVCSNAFRFEGWGSRCNYTAT 120
           CN  Q+ +NY C  + G T      V   A  +S+ CSN           NYT T
Sbjct: 214 CNNTQDGKNYTCTCSPGYTGRHCDTVIPKAC-VSSPCSNGSICNNTQDGKNYTCT 267


>SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1306

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -1

Query: 335  RTQQMFTIDFHGEGITSCNKNQNPQNYICVITGGRTSCESARVGTTALPISAVCSNAFRF 156
            R  + F +DF G       KN   + YI + TGG     +A +     P+  V  NA  F
Sbjct: 1029 RPFKTFGVDFAGPLYYKLAKNGKGKCYIIIFTGGVQRKLNAFITRRTRPVRIVSDNASVF 1088

Query: 155  E 153
            +
Sbjct: 1089 K 1089


>SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 869

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
 Frame = +3

Query: 165 RVTAYG*NRQGGGTYPCGLTRGPTTSNYT-----NIILRV---LIFITRCYSFTVEVNRE 320
           R+T  G N    G Y C +T      +YT       ++R+   +I IT  ++FTV    E
Sbjct: 86  RLTIQGLNPDSAGKYMCNVTNAFGWESYTYSIKVEPVIRIAPQIIDITTNFTFTVGQTAE 145

Query: 321 HLLSTYF 341
            + + YF
Sbjct: 146 LMCTCYF 152


>SB_27075| Best HMM Match : rve (HMM E-Value=1.5e-16)
          Length = 656

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 26  RAHNLPGDKWLLEPIDIYNVNAATHLEILVLRSQYSYNDYPTLQTETRYCI 178
           R H++PG  W +   D+++    T+L +    S+Y   +   L+  T  CI
Sbjct: 426 RPHDIPGLPWQIVGTDLFDYGGHTYLVVTDFYSKYF--EIELLRQSTATCI 474


>SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1451

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 26   RAHNLPGDKWLLEPIDIYNVNAATHLEILVLRSQYSYNDYPTLQTETRYCI 178
            R H++PG  W +   D+++    T+L +    S+Y   +   L+  T  CI
Sbjct: 886  RPHDVPGLPWQIVGTDLFDYGGHTYLVVTDFYSKYF--EIELLRQSTATCI 934


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,610,548
Number of Sequences: 59808
Number of extensions: 320647
Number of successful extensions: 934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)