Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1205
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-4|AAN84850.1|  356|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z83216-7|CAB05676.2|  320|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81586-10|CAD56598.1|  349|Caenorhabditis elegans Hypothetical p...    27   6.7  

>U64857-4|AAN84850.1|  356|Caenorhabditis elegans Hypothetical
           protein C37C3.7 protein.
          Length = 356

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 152 GW-GSRCNYTATLKLISQGGWRHLRCRCLWARVTTYHQVGCELVHQC 15
           GW G  C+Y    K  ++G W+  RC C    V +Y    C+   +C
Sbjct: 111 GWKGEMCDYRPAEKCGNKGEWKGDRCEC----VGSYFGSECQYTSKC 153


>Z83216-7|CAB05676.2|  320|Caenorhabditis elegans Hypothetical
           protein C08F11.9 protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
 Frame = +3

Query: 324 LLSTYFIRKILRQVFFFLPLLIALRGYFSF--------IKSIELVGMKKSKY 455
           L+ +YF   I+ QVF  L  L+AL+ +  +        +KS++++  KK KY
Sbjct: 102 LIGSYFALYIIVQVFHLLIFLLALQRFLLYYYPSTGKHVKSVQMIIFKKIKY 153


>Z81586-10|CAD56598.1|  349|Caenorhabditis elegans Hypothetical
           protein T05F1.13 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 228 GPTTSNYTNIILRVLIFITRCYSFTVEVNREHLLSTYFIRKILRQV-FFFLPLLIALRGY 404
           G  T N T IIL++L         T+ +     +++  +  +L+    F L +  A+RG 
Sbjct: 152 GQCTPNITGIILKLLKMEGISSCNTLSIPSGGAITSDLLEYLLQNPNLFCLNINCAVRGS 211

Query: 405 FSFIKSIEL 431
           F F+K + +
Sbjct: 212 FQFVKEVNI 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,829,729
Number of Sequences: 27780
Number of extensions: 250849
Number of successful extensions: 633
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)