Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1205
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35950.1 68418.m04329 jacalin lectin family protein similar t...    29   2.7  
At3g19516.1 68416.m02474 hypothetical protein                          28   4.7  
At5g64550.1 68418.m08112 loricrin-related contains weak similari...    27   6.2  
At1g64140.1 68414.m07266 expressed protein similar to putative d...    27   6.2  
At4g33200.1 68417.m04727 myosin, putative similar to myosin (GI:...    27   8.3  

>At5g35950.1 68418.m04329 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 444

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
 Frame = -1

Query: 422 TFDETEIASQGYQQR*KKKYLS*NFSNEIRTQQMFTIDFHGEGITSCNKN-QNPQNYICV 246
           TFD T I +         +     +  +I TQ  FTI++  E ITS   +  + Q Y C+
Sbjct: 176 TFDGTSIRNMRVDYDKVGQVECYEYGVKIGTQNQFTINYPYECITSVGGSYADTQPYRCI 235

Query: 245 I--------TGGRTSCESARVGTTAL 192
           +        + GRTS      GTT L
Sbjct: 236 VLRSLTFKTSNGRTSVFGKETGTTFL 261


>At3g19516.1 68416.m02474 hypothetical protein
          Length = 143

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 311 DFHGEGITSCNKNQNPQNYICVITGGRTSCESARVGTTALP 189
           DF      S  K+QN ++Y+ +I   +TS E+  +G   +P
Sbjct: 6   DFEKRLRESTEKSQNLKDYLGIIEFSKTSIETKELGADLIP 46


>At5g64550.1 68418.m08112 loricrin-related contains weak similarity
           to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
          Length = 634

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = -1

Query: 305 HGEG----ITSCNKNQNPQNYICVITGGRTSCESARVGTTALPISAVCSNAFRFEGWGSR 138
           HG G    I SC ++   Q  +C+  GG   C+S+     A   +  C    +  G G R
Sbjct: 311 HGGGKRCRIESCTRSAEGQAGLCISHGGGRRCQSSGCTKGAQGSTNYC----KAHGGGKR 366

Query: 137 CNYTATLK 114
           C +    K
Sbjct: 367 CIFAGCTK 374


>At1g64140.1 68414.m07266 expressed protein similar to putative
           disease resistance protein GB:CAB40943 GI:4586107 from
           [Arabidopsis thaliana]; weak similarity to Loricrin
           (Swiss-Prot:P23490) [Homo sapiens]
          Length = 646

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = -1

Query: 305 HGEG----ITSCNKNQNPQNYICVITGGRTSCESARVGTTALPISAVCSNAFRFEGWGSR 138
           HG G    +  C K+   +   CV  GG   C+S   G +A   +  C    +  G G R
Sbjct: 456 HGGGKRCAVPECTKSARGRTDFCVRHGGGKRCQSEGCGKSAQGSTDFC----KAHGGGKR 511

Query: 137 C 135
           C
Sbjct: 512 C 512


>At4g33200.1 68417.m04727 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]
          Length = 1522

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 315  REHLLSTYFIRKILRQVFFFLPL 383
            RE+ + ++FIRK++ QVF F+ L
Sbjct: 1320 RENHVPSFFIRKLVTQVFSFINL 1342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,799,995
Number of Sequences: 28952
Number of extensions: 219545
Number of successful extensions: 442
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)