Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1204
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...    77   2e-15
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.1  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   5.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   7.2  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 39/82 (47%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
 Frame = +3

Query: 15  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 188
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 189 MPKLKAFQKIQIRLVRELEKKF 254
            P LKAF K Q RL RELEKKF
Sbjct: 66  QPLLKAFHKCQARLTRELEKKF 87



 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 28/47 (59%), Positives = 37/47 (78%)
 Frame = +2

Query: 245 KEVRGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 385
           K+   +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V++AILE
Sbjct: 85  KKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILE 129


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 279  ETVRSCLSPATKPVLLTNKRGHAQ 350
            E+ +  ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 570 FAQPEWLNWQICKALNILL 626
           F++ EW+++  C+ALNI L
Sbjct: 75  FSKDEWMHFITCQALNITL 93


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 492 SPCSTSPFASWRNSEEAPHPIALSQQFAQPEWL 590
           SP       +  +SE+  H + L++Q+A+P+W+
Sbjct: 209 SPLEVHTIFTHISSEDLAH-LGLNEQYARPDWM 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,954
Number of Sequences: 5004
Number of extensions: 52705
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)