Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1204
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 81 1e-15
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 66 2e-11
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 39 0.003
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 31 0.80
05_01_0474 - 3797926-3798609 29 2.4
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 4.3
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 4.3
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 29 4.3
03_02_0488 - 8824980-8825267,8825364-8827775 29 4.3
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 7.5
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 80.6 bits (190), Expect = 1e-15
Identities = 40/82 (48%), Positives = 59/82 (71%), Gaps = 2/82 (2%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 188
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKF 254
KAF+KI +RLVRELEKKF
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKF 88
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +2
Query: 245 KEVRGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 385
K+ GK VV V R+I+ P + V +RPR+RTLT+V+D ILE
Sbjct: 86 KKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILE 128
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/64 (53%), Positives = 48/64 (75%), Gaps = 2/64 (3%)
Frame = +3
Query: 69 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 242
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 243 EKKF 254
EKKF
Sbjct: 98 EKKF 101
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +2
Query: 245 KEVRGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 385
K+ GK VV V R+I+ P + V RPR+RTLT+V+D ILE
Sbjct: 99 KKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILE 141
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +3
Query: 123 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKF 254
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKF
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKF 73
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +2
Query: 245 KEVRGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 385
K+ GK VVF R+I+ +P +K + PR+RTL +V+D ILE
Sbjct: 71 KKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGILE 113
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 31.1 bits (67), Expect = 0.80
Identities = 25/80 (31%), Positives = 35/80 (43%)
Frame = +1
Query: 346 LKDIDLCVRCYPRGGARYPIRPIVSRITIHWPSFYNRRDWENPGVTQLNRLAAHPLSPAG 525
L+ ++ C R R IR IVS + H S Y+R D E T+L HP+
Sbjct: 401 LRGVEECARAQAESPNRETIRSIVSTVLSHLAS-YDRVDAE---ATELRAQLQHPVPRPP 456
Query: 526 VIAKRPRTRSPFPNSLRSLN 585
+ PR P P+ R L+
Sbjct: 457 ELDGHPRDSLP-PSVTRRLS 475
>05_01_0474 - 3797926-3798609
Length = 227
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 468 KPWRYPT*SPCSTSPFASWRNSEEAPHPIALSQQF 572
+PWR SPCSTS +SW S +P +++S F
Sbjct: 117 RPWRRT--SPCSTSSSSSW--SYSSPSSVSMSPVF 147
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +3
Query: 75 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 209
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +3
Query: 75 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 209
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 577 CANCWERAIGCGASSLLRQLAKGDVLQ 497
C NCW + CG SL LA+GD Q
Sbjct: 516 CRNCW---VSCGDGSLGEPLARGDGYQ 539
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 24 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 200
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 201 KAFQKI 218
+ +++
Sbjct: 359 DSSEEL 364
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +3
Query: 75 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 209
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,791,526
Number of Sequences: 37544
Number of extensions: 385589
Number of successful extensions: 1207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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