Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1204
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   101   3e-22
Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF068709-1|AAQ91906.1|  449|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  101 bits (243), Expect = 3e-22
 Identities = 47/80 (58%), Positives = 61/80 (76%)
 Frame = +3

Query: 15  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 194
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 195 KLKAFQKIQIRLVRELEKKF 254
           +LKAF KI   LVRELEKKF
Sbjct: 67  QLKAFHKIHPALVRELEKKF 86



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 23/48 (47%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
 Frame = +2

Query: 245 KEVRGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDAILE 385
           K+  G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+DA L+
Sbjct: 84  KKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLD 131


>Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical protein
            C25F9.2 protein.
          Length = 1469

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 364  CVRCYPRGGARYPIRPIVSRITIHWPSFYNRRDWENPG 477
            C RC+P    ++P+R  V+ + ++  +     D +N G
Sbjct: 974  CPRCFPESDQKHPLRKDVTFLDLYEDTLRREHDLKNAG 1011


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 79  SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 189
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +3

Query: 3   KMSTKIIKASGAEADSFE---TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSI 173
           K + K  K   AEA+ ++   T  S+ L ELE       Q +E +  K++E+E+ NK+ +
Sbjct: 243 KANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQLV 302


>AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical
           protein C24B9.3a protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = -2

Query: 537 LRYYASWRKGMCCKAIKLGNARVFPVTTVVKRRPVNC 427
           L Y ++W   +CC  ++       P T   +   V+C
Sbjct: 207 LTYVSAWMAALCCPGVQFSTVSPAPTTVPTQSPSVSC 243


>AF068709-1|AAQ91906.1|  449|Caenorhabditis elegans Hypothetical
           protein C24B9.3b protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = -2

Query: 537 LRYYASWRKGMCCKAIKLGNARVFPVTTVVKRRPVNC 427
           L Y ++W   +CC  ++       P T   +   V+C
Sbjct: 227 LTYVSAWMAALCCPGVQFSTVSPAPTTVPTQSPSVSC 263


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 101 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 15
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,549,005
Number of Sequences: 27780
Number of extensions: 303948
Number of successful extensions: 944
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)