Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1204
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 83 2e-16
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 83 2e-16
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 78 4e-15
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 73 1e-13
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 73 1e-13
At3g05040.1 68416.m00547 expressed protein weak similarity to ex... 29 3.6
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 29 3.6
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 29 3.6
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 28 4.7
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]... 28 4.7
At1g65670.1 68414.m07452 cytochrome P450 family protein similar ... 28 6.2
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 82.6 bits (195), Expect = 2e-16
Identities = 41/82 (50%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 188
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKF 254
KAF+KI +RLVRELEKKF
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKF 88
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +2
Query: 245 KEVRGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 385
K+ GK V+FV R+I+ P + V +RPR+RTLTSV++A+LE
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLE 128
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 82.6 bits (195), Expect = 2e-16
Identities = 41/82 (50%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 188
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKF 254
KAF+KI +RLVRELEKKF
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKF 88
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +2
Query: 245 KEVRGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 385
K+ GK V+FV R+I+ P + V +RPR+RTLTSV++A+LE
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLE 128
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 78.2 bits (184), Expect = 4e-15
Identities = 41/82 (50%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 188
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKF 254
KAF+KI RLVRELEKKF
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKF 88
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = +2
Query: 245 KEVRGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 385
K+ GK V+FV R+I+ P V +RPR+RTLTSV++A+LE
Sbjct: 86 KKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLE 128
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 73.3 bits (172), Expect = 1e-13
Identities = 35/82 (42%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 188
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKF 254
KA++KI +RLVRELEKKF
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKF 88
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +2
Query: 245 KEVRGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 385
K+ GK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILD 128
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 73.3 bits (172), Expect = 1e-13
Identities = 35/82 (42%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 188
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKF 254
KA++KI +RLVRELEKKF
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKF 88
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +2
Query: 245 KEVRGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 385
K+ GK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILD 128
>At3g05040.1 68416.m00547 expressed protein weak similarity to
exportin 5 [Homo sapiens] GI:10444427
Length = 522
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 558 LSQQFAQPEWLNWQICKALNILLKI 632
LSQQ+ QPEW N + + +LL++
Sbjct: 179 LSQQWIQPEWQNNYLSDPMGLLLRV 203
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 334 KEATLKDIDLCVRCYPRGGARYPIRPIVSRITIHW 438
+E++LK CVRCYP G Y + + R+++ +
Sbjct: 180 RESSLKYQTRCVRCYP-NGTGYALSSVEGRVSMEF 213
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +3
Query: 54 ETSISQALVELETN-SDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRL 230
E + SQ + L++ +D+K QLR+ TK+KEI + +S++ + K+Q+R
Sbjct: 915 EEAKSQEIEALQSVLTDIKLQLRDTQETKSKEIS--DLQSVLTDI---------KLQLRD 963
Query: 231 VRELEKKFVVNM*SLLETVRSCLSPATKPVLLTN 332
+E + K + ++ S L+ ++ + +K + +TN
Sbjct: 964 TQETKSKEISDLQSALQDMQLEIEELSKGLEMTN 997
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 334 KEATLKDIDLCVRCYPRGGARYPIRPIVSRITIHW 438
+E++LK CVRCYP G Y + + R+ + +
Sbjct: 181 RESSLKYQTRCVRCYP-NGTGYALSSVEGRVAMEF 214
>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P26969 Glycine dehydrogenase [decarboxylating],
mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
contains Pfam profile PF02347: Glycine cleavage system
P-protein
Length = 1044
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 349 KDIDLCVRCYPRGGARYPIRPIVSRITIHWPSFYN 453
KD+ LC P G + + + WPSF N
Sbjct: 570 KDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFTN 604
>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
Length = 482
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 349 KDIDLCVRCYPRGGARYPI 405
K++ LC RC+P G R+P+
Sbjct: 195 KELALCWRCFPSGWFRFPL 213
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,976,133
Number of Sequences: 28952
Number of extensions: 292131
Number of successful extensions: 871
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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