Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1203
         (557 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000060F114 Cluster: Protein ITFG3.; n=3; Gallus gall...    33   6.0  
UniRef50_Q2NJ37 Cluster: Na+ driven multidrug efflux pump; n=5; ...    33   6.0  

>UniRef50_UPI000060F114 Cluster: Protein ITFG3.; n=3; Gallus
           gallus|Rep: Protein ITFG3. - Gallus gallus
          Length = 551

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 445 LLWLFAFSYLLPLPRNDVSVNEQLRFRSNCSFYYLLAIKIV 323
           L+ +FAFS+++P P   VS    LR   N   Y  LAI+ V
Sbjct: 60  LIIVFAFSFIIPCPERPVSERTWLRNYDNAVAYRFLAIEDV 100


>UniRef50_Q2NJ37 Cluster: Na+ driven multidrug efflux pump; n=5;
           Candidatus Phytoplasma asteris|Rep: Na+ driven multidrug
           efflux pump - Aster yellows witches'-broom phytoplasma
           (strain AYWB)
          Length = 502

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 442 LWLFAFSYLLPLPRNDVSVNEQLRFRSNCSFYYLLAIKIVVV 317
           L +     LLP P  D+ +N+  R ++  ++YYL+ I  V +
Sbjct: 125 LLVLGLGVLLPAPFGDIFLNKSYRSQNGLTYYYLILITFVAI 166


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 477,502,708
Number of Sequences: 1657284
Number of extensions: 8368966
Number of successful extensions: 14554
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14551
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)