Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1203
         (557 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    26   0.19 
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   2.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.1  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   4.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   4.1  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 355 SFYYLLAIKIVVVINSNKQHKNRQHVRL 272
           +F+  L+I +VV I S   H+N  H+++
Sbjct: 38  AFFLALSIGVVVSIYSKSFHRNEIHIKI 65


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -2

Query: 442 LWLFAFSYL-----LPLPRNDVSVNEQLRFRSNCSFYYLLAIKIVV 320
           L+L+ F+YL     +    + +   E       CS YY+L I ++V
Sbjct: 135 LFLYIFTYLSVTCYVTYAWSPIDHTESNIINDMCSLYYILQITLIV 180


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 451 VNLLWLFAFSYLLP 410
           V  +WL  F+YL+P
Sbjct: 119 VQWIWLLIFAYLIP 132



 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 289 RQHVRLGYLNNYELPLHI 236
           R+H+ L + N YEL  HI
Sbjct: 570 REHLGLKHDNYYELETHI 587


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 451 VNLLWLFAFSYLLP 410
           V  +WL  F+YL+P
Sbjct: 119 VQWIWLLIFAYLIP 132



 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 289 RQHVRLGYLNNYELPLHI 236
           R+H+ L + N YEL  HI
Sbjct: 570 REHLGLKHDNYYELETHI 587


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 289 RQHVRLGYLNNYELPLHI 236
           R+H+ L + N YEL  HI
Sbjct: 23  REHLGLKHDNYYELETHI 40


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 289 RQHVRLGYLNNYELPLHI 236
           R+H+ L + N YEL  HI
Sbjct: 337 REHLGLKHDNYYELETHI 354


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,079
Number of Sequences: 336
Number of extensions: 2378
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)