Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1203
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   2.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   5.7  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   10.0 
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    25   10.0 

>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 400 NDVSVNEQLRFRSNCSFYYLLAIKIVVVIN-SNKQHKNRQHVRLGYLNNYEL 248
           N V +N +L           L  K++ ++  SN  H+  QH+ +G  N+Y+L
Sbjct: 394 NIVEINNRLDLVEKFKLLPELCSKVINLLKKSNDTHRILQHLLMGRGNSYDL 445


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 112  EELKKYIRIHLIILMKCAYLC 50
            E+ + YIRI L+ LM+C  +C
Sbjct: 1331 EDKENYIRILLLPLMECMAIC 1351


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 328 IVVVINSNKQHKNRQHVRLGYLNNYE 251
           ++   + N++   +  V LGYLNN+E
Sbjct: 492 LLAAAHRNREKCKKLSVELGYLNNHE 517


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 249 YHYTLHMSSSVYETSI*FKGEKNKINKI 166
           +H+   +   V+E  I +KGEK K+ ++
Sbjct: 50  HHFRSKVRMWVFEEEIEYKGEKRKLTEV 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,130
Number of Sequences: 5004
Number of extensions: 39191
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)