Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1203
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-8|AAD12840.2|  317|Caenorhabditis elegans Serpentine re...    29   3.0  
AF078157-16|AAG24082.1|  343|Caenorhabditis elegans Serpentine r...    28   5.2  

>AF125459-8|AAD12840.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 21 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -2

Query: 427 FSYLLPLP---RNDVSVNEQ-LRFRSNCSFYYLLAIKIVVVINSNKQHKNRQHVR 275
           FSY  PLP     D SV    L +    S+  L AI  V+++N+  + KN++H R
Sbjct: 9   FSYSDPLPFTCNEDPSVKLSILYYLIQASYLVLSAILNVLILNTIFKSKNKEHYR 63


>AF078157-16|AAG24082.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein89 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 391 SVNEQLRFRSNCSFYYLLAIKIVVVINSNKQHKNRQHVRLGYLNNYELPLHI 236
           SV  Q+ F   CSFYYL       ++ S++   N++H  +G L    + L +
Sbjct: 222 SVMSQILFFIVCSFYYLYLAP--SLLTSSQTRSNQKHFFIGTLKQTGVALSV 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,436,825
Number of Sequences: 27780
Number of extensions: 212026
Number of successful extensions: 370
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)