Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1201
         (316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-4|CAB07699.1|  360|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AF067949-8|AAX88812.1|  565|Caenorhabditis elegans Peroxisomal m...    26   5.0  
AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal m...    26   5.0  
AF067949-6|AAC19238.1|  598|Caenorhabditis elegans Peroxisomal m...    26   5.0  
Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protei...    25   8.7  

>Z93393-4|CAB07699.1|  360|Caenorhabditis elegans Hypothetical
           protein Y48E1B.3 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 159 YNTLQPTLNTVFIYKNTSVILSHPLEVLL 245
           YNTL+ + NT+F++  +S+ L   L+ LL
Sbjct: 47  YNTLETSRNTIFLFAISSLDLLGELDNLL 75


>AF067949-8|AAX88812.1|  565|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform c protein.
          Length = 565

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 149 ICILQYLTTYIKYCIYLQEHK 211
           +C+L  L  +  +C+Y+Q+ K
Sbjct: 89  LCLLMALMNFFSWCLYIQQRK 109


>AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform b protein.
          Length = 626

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 149 ICILQYLTTYIKYCIYLQEHK 211
           +C+L  L  +  +C+Y+Q+ K
Sbjct: 89  LCLLMALMNFFSWCLYIQQRK 109


>AF067949-6|AAC19238.1|  598|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform a protein.
          Length = 598

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 149 ICILQYLTTYIKYCIYLQEHK 211
           +C+L  L  +  +C+Y+Q+ K
Sbjct: 89  LCLLMALMNFFSWCLYIQQRK 109


>Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical
           protein F40G12.1 protein.
          Length = 341

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +2

Query: 137 SFYLICILQYLTTYIKYCIYLQEHKRNFEP 226
           SF+++ I+ Y+  +I Y   +++H++ + P
Sbjct: 177 SFFIVNIIGYIGIHICYSYNIKKHRKFYSP 206


>U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protein
           27 protein.
          Length = 388

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 155 ILQYLTTYIKYCIYLQEHKRNFEPPS 232
           I  Y+  +   C Y ++H R F PP+
Sbjct: 342 IQSYVNCFSTKCYYCKKHLRQFMPPT 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,539,332
Number of Sequences: 27780
Number of extensions: 112220
Number of successful extensions: 195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)