Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1201
         (316 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   0.87 
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   2.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   6.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   8.1  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 0.87
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 159 YNTLQPTLNTVFIYKNTSVILSHPLEVL 242
           YN   P  ++  I  NT+VI+SH  EV+
Sbjct: 95  YNNADPQYSSAVI--NTNVIVSHTGEVV 120


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 91  IKIFVKKKNGNNNISFVLPNMHITIP 168
           +K+    KNGN +   ++  + IT+P
Sbjct: 73  MKLLRTFKNGNFDFDMIVKQLEITMP 98


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 87  INKNLCQKKKREQQHF 134
           ++  L  K+ +EQQHF
Sbjct: 381 LSTKLTLKRHKEQQHF 396


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 149 ICILQYLTTYIKYC 190
           ICIL+ +T  +++C
Sbjct: 158 ICILKSITCALQFC 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,003
Number of Sequences: 438
Number of extensions: 1721
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)