Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1200
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 56 4e-09
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 45 1e-05
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 35 0.008
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 34 0.018
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 34 0.018
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 31 0.17
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po... 29 0.52
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 29 0.68
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 26 3.6
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 25 8.4
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 25 8.4
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 56.0 bits (129), Expect = 4e-09
Identities = 26/72 (36%), Positives = 41/72 (56%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
+P+ ++I EV F+ +PWR +++RG +++LAD IE++
Sbjct: 44 SPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSSAQRGRCLSRLADCIEQNLE 103
Query: 436 YLASLETLDNGK 471
YLAS+ETLDNGK
Sbjct: 104 YLASIETLDNGK 115
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +1
Query: 361 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDL 501
W+ + SE+G L+ KLA+L E+ LA++E +D+GKP + GD+
Sbjct: 72 WKKVPGSEKGELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDV 118
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 35.1 bits (77), Expect = 0.008
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
NPA ++I + F+ G W +RG ++ K+A ++ R
Sbjct: 44 NPATEEIIGTCANASAKDVDSAVENAYNTFRSGI-WAKWPGKQRGLVLRKIAKMMREKRE 102
Query: 436 YLASLETLDNGKP 474
LA ++T++ GKP
Sbjct: 103 LLAGIDTINCGKP 115
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 33.9 bits (74), Expect = 0.018
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
NPA G++I +V FK ++ +R L+ + A+LI ++
Sbjct: 39 NPATGEIIGKVADVSVEETKKAISAANEAFKT---YKNFTHVQRSQLLERWAELIMENKD 95
Query: 436 YLASLETLDNGKP 474
L + TL+NGKP
Sbjct: 96 DLVKMLTLENGKP 108
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 33.9 bits (74), Expect = 0.018
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 361 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYA 507
+R D ER A++ + DLI + LA++ TL+NGK D+ +YA
Sbjct: 77 YRNSDIKERYAILRRWYDLIMENADDLATMMTLENGKALGDAKGEVVYA 125
>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 126
Score = 30.7 bits (66), Expect = 0.17
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 529 RYRRFFIKHTDHRNTSPCMVCRCPAS 452
+Y FF K ++ NT+ +VC CP S
Sbjct: 42 KYENFFAKENENLNTAARLVCDCPIS 67
>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 171
Score = 29.1 bits (62), Expect = 0.52
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -2
Query: 297 GMLDLSYNLAIGRVSVLKVFPSEDFTHSLFMKRPVYK 187
G ++ SYNL +G++ E+F+ + +PV++
Sbjct: 90 GAIETSYNLPVGKIEEAMKLSDEEFSKTYGFSKPVFE 126
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 348 FERISSCLHSFVHICFVGMLDLSYNLAIGRVSVLKVF 238
FE+++ ++F IC V L LS+ L R S L+V+
Sbjct: 31 FEKVNQHRNTFAFICDVFWLKLSFTL---RYSTLQVY 64
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 28.7 bits (61), Expect = 0.68
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 361 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDL 501
W++ +ER + L + I R++ A + D GK D+ FG++
Sbjct: 41 WKSTSFAERRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAFGEI 87
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 167 EPVPLKQLLQNSLFAPEPICRRSATFLIYLYVPKYTDKIISYSYRHKFI 21
+P + L+ ++ + +C R AT +Y Y P + +S+SYR I
Sbjct: 326 KPSTTSKNLKFTIMSYNVLCERYATSTLYGYTPSWA---LSWSYRKDLI 371
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 299 TKQMWTKL*RQLEMRSNLDHHGEQWTPPRGGPLST 403
T M TKL Q +M+ +D H WTP ST
Sbjct: 24 TSAMDTKL--QTKMKEIIDQHTSTWTPVVSSVTST 56
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/13 (61%), Positives = 13/13 (100%)
Frame = +1
Query: 55 LSVYLGTYKYIKN 93
LS+YLGTY+++K+
Sbjct: 233 LSIYLGTYEHVKS 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,513
Number of Sequences: 5004
Number of extensions: 49259
Number of successful extensions: 115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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