Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1200
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 52 5e-07
06_03_0627 + 22903346-22903523,22906010-22906152,22906235-229066... 46 2e-05
01_05_0544 + 23098921-23098953,23099209-23099272,23099942-231000... 44 7e-05
02_05_0620 - 30412004-30412429,30412509-30412646,30412729-304128... 42 5e-04
01_05_0545 + 23109920-23110040,23113363-23113505,23113626-231140... 40 0.001
02_01_0550 + 4044683-4044784,4044862-4044975,4045277-4045360,404... 37 0.011
04_04_0154 - 23146445-23146535,23146689-23146795,23146933-231469... 36 0.019
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 30 1.6
08_02_0717 + 20372728-20372836,20372936-20373078,20374131-203742... 29 2.1
05_05_0263 - 23673014-23673697,23673772-23674188 29 2.8
01_06_1764 - 39730655-39730789,39730917-39731048,39731257-397313... 29 2.8
02_02_0500 - 10993675-10994067,10994434-10995738 28 4.9
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 51.6 bits (118), Expect = 5e-07
Identities = 28/74 (37%), Positives = 37/74 (50%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
+P G++IA V F G PW M A ER ++ + ADLIE+
Sbjct: 90 DPRTGELIAHVAEGDAEDINRAVHAARKAFDEG-PWPKMTAYERSRILLRFADLIEKHND 148
Query: 436 YLASLETLDNGKPY 477
+A+LET DNGKPY
Sbjct: 149 EIAALETWDNGKPY 162
>06_03_0627 +
22903346-22903523,22906010-22906152,22906235-22906618,
22906980-22907069,22907147-22907320,22907414-22907551,
22907719-22907856,22907958-22908019,22908240-22908513
Length = 526
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/73 (36%), Positives = 35/73 (47%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
+P G VIA V F G W M SERG ++ K A+++ER
Sbjct: 67 DPRTGDVIARVAEGDKEDVDLAVKAAREAFDHGE-WPRMSGSERGRVMAKYAEVVERHAD 125
Query: 436 YLASLETLDNGKP 474
LA+LE+LD GKP
Sbjct: 126 ELAALESLDAGKP 138
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 182 EILYTGLFINNEWVKSSDGKTFKT 253
EI YT LFIN +V ++ GKTF+T
Sbjct: 42 EIRYTKLFINGRFVDAASGKTFET 65
>01_05_0544 +
23098921-23098953,23099209-23099272,23099942-23100084,
23100246-23100719,23100950-23101123,23101230-23101367,
23101489-23101589,23101910-23102183
Length = 466
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/72 (33%), Positives = 36/72 (50%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
+P G+VIA++ F G PW M RG +++K ADL+E+
Sbjct: 40 DPRTGEVIAKIAEGDKADIDLAVKAAREAFDHG-PWPRMSGFARGRILHKFADLVEQHVE 98
Query: 436 YLASLETLDNGK 471
LA+L+T+D GK
Sbjct: 99 ELAALDTVDAGK 110
>02_05_0620 -
30412004-30412429,30412509-30412646,30412729-30412866,
30412966-30413139,30413211-30413684,30413775-30413917,
30414002-30414160,30414943-30415042
Length = 583
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/72 (36%), Positives = 33/72 (45%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
+P G VIA V F G PW M A ER ++ + ADLIE+
Sbjct: 94 DPRTGDVIARVAEGDAEDVNRAVAAARRAFDEG-PWPRMTAYERCRVLLRFADLIEQHAD 152
Query: 436 YLASLETLDNGK 471
+A+LET D GK
Sbjct: 153 EIAALETWDGGK 164
>01_05_0545 +
23109920-23110040,23113363-23113505,23113626-23114009,
23114106-23114219,23114310-23114483,23114608-23114745,
23114884-23115021,23115094-23115155,23115268-23115541
Length = 515
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
+P G V+A + F+ G W M ER ++NKLADL+E+
Sbjct: 48 DPRTGDVLAHIAEADKADVDLAVKAAREAFEHGK-WPRMSGYERSRVMNKLADLVEQHAD 106
Query: 436 YLASLETLDNGK 471
LA+L+ D GK
Sbjct: 107 ELAALDGADAGK 118
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2
Query: 182 EILYTGLFINNEWVKSSDGKTFKT 253
EI +T LFIN E+V ++ GKTFKT
Sbjct: 23 EIKFTKLFINGEFVDAASGKTFKT 46
>02_01_0550 +
4044683-4044784,4044862-4044975,4045277-4045360,
4045818-4045917,4046923-4046971,4047071-4047158,
4047251-4047361,4047771-4047833,4047942-4048052,
4048517-4048582,4048689-4048766,4049553-4049630,
4049784-4049850,4049930-4050015,4050301-4050333,
4050426-4050458,4050754-4050854,4050986-4051071,
4051478-4051584,4051683-4051839,4051854-4051984
Length = 614
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/77 (31%), Positives = 33/77 (42%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
NPA G+ +A V F W + A+ER + K DLI +
Sbjct: 103 NPATGETLANVSCMGSKETSDAIASAHSTFY---SWSKLTANERSKALRKWHDLIISHKE 159
Query: 436 YLASLETLDNGKPYKDS 486
LA L TL+ GKP K++
Sbjct: 160 ELALLMTLEQGKPMKEA 176
>04_04_0154 -
23146445-23146535,23146689-23146795,23146933-23146993,
23147070-23147221,23147306-23147383,23147696-23147809,
23147880-23147956,23148128-23148194,23148341-23148406,
23148528-23148651,23148733-23148825,23149446-23149594,
23149681-23149761,23150502-23150644,23150758-23150872
Length = 505
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 352 GSPWRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDL 501
G W + R + +A I+ ++YLA LETLD+GKP D GD+
Sbjct: 65 GRHWSRAPGAVRAKYLKAIAAKIKDKKSYLALLETLDSGKPL-DEAAGDM 113
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 403 KLADLIERDRTYLASLETLDNGKPYKDSYFGDLYA 507
K+ L R YLASL + D+ P KD F ++YA
Sbjct: 287 KIYRLRNPSRKYLASLSSYDSSNPTKDWGFPNIYA 321
>08_02_0717 +
20372728-20372836,20372936-20373078,20374131-20374211,
20374307-20374510,20374789-20374796,20375153-20375245,
20375377-20375500,20375585-20375650,20375841-20375907,
20376600-20376676,20377032-20377145,20377546-20377623,
20377705-20377856,20377960-20378020,20378292-20378398,
20378497-20378562,20379099-20379177,20379671-20379967
Length = 641
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 352 GSPWRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDS 486
G W + R + +A I ++ LA LETLD GKP ++
Sbjct: 63 GRDWARAPGAVRAKYLRAIAAKIIERKSELARLETLDCGKPLDEA 107
>05_05_0263 - 23673014-23673697,23673772-23674188
Length = 366
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 349 LGSPWRTMDASERGALINKLADLIERDR 432
+ SPWR +DA G ++ +L L++R R
Sbjct: 1 MDSPWRDLDADVLGFILKRLPCLVDRRR 28
>01_06_1764 -
39730655-39730789,39730917-39731048,39731257-39731301,
39731390-39731506,39731631-39731811,39732453-39732541,
39733177-39733217,39733520-39733638,39733720-39733820,
39734098-39734163,39734247-39734329,39734570-39734750,
39734846-39734965
Length = 469
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 443 LAWRRWTTANHTRTRISVICMLNKKPTVSTAGWARQDPRECF 568
LA ++ T R+ +S M+ + AGW R+DP+ C+
Sbjct: 192 LAEKQLETVGEVRSHLSKF-MVECRDATDRAGWGRKDPQPCW 232
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 255 KPCQWPSYS*GPTCQQSRCGQSCEGS*KCVQTWITMENNGRLREGGP 395
K C P +S P RC +GS K + ++NNG + GP
Sbjct: 337 KSCDVPGFSGVPPTALVRCFHMGKGSNKVGSLQLFVDNNGSCEDMGP 383
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,720,404
Number of Sequences: 37544
Number of extensions: 348808
Number of successful extensions: 850
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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