Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1200
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   4.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.3  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   5.3  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   5.3  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   9.2  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 528 DTVGFLLSIQITEIRVLVWF 469
           + +   LS+ +TE +V +WF
Sbjct: 37  ERLNLALSLSLTETQVKIWF 56


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 265 WQGFSFEGLPIRRLHPLIV 209
           + GF++EGL  R L P I+
Sbjct: 626 FDGFNWEGLRARTLEPPIM 644


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 221 VKSSDGKTFKTET 259
           V S +G TFKTET
Sbjct: 82  VTSIEGNTFKTET 94


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 221 VKSSDGKTFKTET 259
           V S +G TFKTET
Sbjct: 84  VTSIEGNTFKTET 96


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 516 FLLSIQITEIRVLVWF 469
           F  S+ +TE +V +WF
Sbjct: 42  FSSSLHLTETQVKIWF 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,889
Number of Sequences: 438
Number of extensions: 3975
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)