Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1199
         (506 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    24   0.68 
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         24   0.90 
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           23   1.2  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   4.8  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -3

Query: 378 LKFGVLLWC---LTYVGACFNGITLIILGWIALFTLPK 274
           L F +LLW    L ++  C N     +  WI L+TL K
Sbjct: 138 LFFVILLWISFFLNFMLHCNNTTWRCLYRWIVLYTLSK 175


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 285 TLPKAYEMNKGRWTPTSSWRAPRSTR 208
           +LP+ Y  ++GR   + S R P++ R
Sbjct: 198 SLPRQYSQSRGRHNQSRSKRQPKTGR 223


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 248 HLPLFIS*AFGSVNSAIQPRMMSVIPLKHAPTYVR 352
           H+P FI+ AF S +     ++  V  L+ A  Y+R
Sbjct: 78  HIPNFIAAAFESNSRGGNKKLSKVETLRMAVEYIR 112


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -2

Query: 235 ELARAKINEITAKVRAAVPLGRRAEGDKDK*TPLRAVIY*LHYYFT 98
           ++ R K+N    ++   VP+  R+    DK + LR     L  Y T
Sbjct: 38  KMRRDKLNSYIGELATLVPMVARSAKRMDKTSILRLAATHLRIYQT 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,860
Number of Sequences: 336
Number of extensions: 1097
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)