Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1199
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)             69   2e-12
SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)             31   0.41 
SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)                  31   0.72 
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)                  29   2.9  
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)                      28   5.1  
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)                     27   6.7  
SB_11841| Best HMM Match : Ras (HMM E-Value=0)                         27   6.7  
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   27   8.9  
SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05)                     27   8.9  
SB_18162| Best HMM Match : E-MAP-115 (HMM E-Value=0.21)                27   8.9  

>SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)
          Length = 142

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 31/52 (59%), Positives = 42/52 (80%)
 Frame = -3

Query: 417 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEM 262
           +RRLFLVEDL DS+K  V+L+ L+Y+   F+GITL  +G+I LFT+PKAY+M
Sbjct: 33  VRRLFLVEDLADSIKLLVVLYILSYLAQWFSGITLTFIGFIGLFTVPKAYDM 84


>SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)
          Length = 621

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -3

Query: 435 NAALYELRRLFLVEDLVDSLK 373
           N     LRRLFLVED+VDS+K
Sbjct: 468 NCLTKSLRRLFLVEDIVDSIK 488


>SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)
          Length = 195

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 334 RPHVREAPQQHAELQRVHQVLHQEQS 411
           RPH+R A QQ + +Q+ H  LH++ +
Sbjct: 169 RPHIRLASQQWSAVQQFHDYLHEDDN 194


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 307 DDERDPVEARPHVREAPQQHAELQRVHQVLHQEQS 411
           DD  +  E R   R   ++H ++  VH  LH EQS
Sbjct: 151 DDGWEGKEVRKEARRQEEEHRKVTVVHSKLHPEQS 185


>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
          Length = 603

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 274 LRQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQSAQ 417
           ++Q++Q+Y  +   +   + R   ++  QQH + Q+  Q  HQ+Q  Q
Sbjct: 272 IQQQQQQYIQQQQVQHMQQQRLQQQQLLQQHLQRQQQQQRRHQQQQQQ 319


>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 697

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 274 LRQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQ 408
           LR+R+QR+  +  +R     R   ++  QQ  +LQ++ Q    +Q
Sbjct: 267 LRERQQRHLQQQQQRQQQFQRQQQQQQMQQRQQLQQLQQQQQPQQ 311


>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 968

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 337 PHVREAPQQHAELQRVHQVLHQEQSAQ 417
           PHVR+  Q    + R HQ LHQ + A+
Sbjct: 560 PHVRQGHQHPQRVPRRHQDLHQVRCAR 586


>SB_11841| Best HMM Match : Ras (HMM E-Value=0)
          Length = 523

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 203 GDLVDLGARQLEVGVHLP 256
           GDL DLG RQL V +HLP
Sbjct: 150 GDLFDLGDRQLRV-IHLP 166


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 133 RAVIY*LHYYFTCKAL*ESCGDYCICFL 50
           RA+   LHY+  C      CG  C+C L
Sbjct: 339 RAIGVLLHYFLLCCLFWVGCGGLCLCRL 366


>SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05)
          Length = 964

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 133 RAVIY*LHYYFTCKAL*ESCGDYCICFL 50
           RA+   LHY+  C      CG  C+C L
Sbjct: 826 RAIGVLLHYFLLCCLFWVGCGGLCLCRL 853


>SB_18162| Best HMM Match : E-MAP-115 (HMM E-Value=0.21)
          Length = 659

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = -3

Query: 249 WTPTSSWR--APRSTRSPPR 196
           W PT SW+  APR  RSP R
Sbjct: 3   WQPTFSWKTPAPRRLRSPRR 22


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,718,434
Number of Sequences: 59808
Number of extensions: 151128
Number of successful extensions: 542
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)