Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1199
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.20 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.45 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.45 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.45 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 280 QREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQSAQ 417
           Q   +  T+     P + + H  +A QQH +    H +  Q+Q +Q
Sbjct: 167 QMHHQMHTQHPHMQPQQGQ-HQSQAQQQHLQAHEQHMMYQQQQQSQ 211


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 345 YVGACFNGITLIILGWIALFTLPKAYEMNKGRWTP-TSSWRAPRSTRSPP 199
           Y+G CF  +   +L +  +  + K  +M K R+     S +  R    PP
Sbjct: 286 YLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARENPGPP 335


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 345 YVGACFNGITLIILGWIALFTLPKAYEMNKGRWTP-TSSWRAPRSTRSPP 199
           Y+G CF  +   +L +  +  + K  +M K R+     S +  R    PP
Sbjct: 286 YLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARENPGPP 335


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 345 YVGACFNGITLIILGWIALFTLPKAYEMNKGRWTP-TSSWRAPRSTRSPP 199
           Y+G CF  +   +L +  +  + K  +M K R+     S +  R    PP
Sbjct: 225 YLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARENPGPP 274


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -2

Query: 313 HHPRLDSAVHAAEGLRDEQGQVDANLELARAKINEITAKV 194
           HH    S+    EGL D +G   ++  L   + ++ T  V
Sbjct: 412 HHTTSSSSAAGGEGLADRRGSESSDSVLLSPEASKATEAV 451


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 210 SLILARASSRLASTCPCSSRRPSAA*TALSN 302
           +++ A+  +    TC CS   PS   T LS+
Sbjct: 317 NVMSAKYRNAFKETCRCSPSNPSITRTGLSS 347


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +1

Query: 262 HLVGLRQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQS 411
           H    +QR++     + ER+  E    V    QQ  + Q+      Q+QS
Sbjct: 59  HSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQS 108



 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/58 (24%), Positives = 20/58 (34%)
 Frame = +1

Query: 256 LVHLVGLRQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQSAQLIQG 429
           + H    +  +QR   E       E R H      Q  + Q+  Q   Q+Q  Q   G
Sbjct: 54  IYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQSRMG 111


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 412 QTVPGGGPGG 383
           QTV GGG GG
Sbjct: 963 QTVSGGGMGG 972


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,403
Number of Sequences: 438
Number of extensions: 1493
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)